Instructions to use toolevalxm/MedicalAI-ClinicalBERT-TestRepo with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use toolevalxm/MedicalAI-ClinicalBERT-TestRepo with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("text-classification", model="toolevalxm/MedicalAI-ClinicalBERT-TestRepo")# Load model directly from transformers import AutoTokenizer, AutoModelForSequenceClassification tokenizer = AutoTokenizer.from_pretrained("toolevalxm/MedicalAI-ClinicalBERT-TestRepo") model = AutoModelForSequenceClassification.from_pretrained("toolevalxm/MedicalAI-ClinicalBERT-TestRepo", device_map="auto") - Notebooks
- Google Colab
- Kaggle
toolevalxm commited on
Commit ·
c80ca15
0
Parent(s):
Upload MedicalAI-ClinicalBERT model (epoch_50) with 15 medical benchmark results
Browse files- README.md +101 -0
- config.json +14 -0
- figures/fig1.png +0 -0
- figures/fig2.png +0 -0
- figures/fig3.png +0 -0
- pytorch_model.bin +0 -0
README.md
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---
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license: apache-2.0
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library_name: transformers
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---
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# MedicalAI-ClinicalBERT
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<!-- markdownlint-disable first-line-h1 -->
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<!-- markdownlint-disable html -->
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<!-- markdownlint-disable no-duplicate-header -->
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<div align="center">
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<img src="figures/fig1.png" width="60%" alt="MedicalAI-ClinicalBERT" />
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</div>
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<hr>
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<div align="center" style="line-height: 1;">
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<a href="LICENSE" style="margin: 2px;">
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<img alt="License" src="figures/fig2.png" style="display: inline-block; vertical-align: middle;"/>
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</a>
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</div>
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## 1. Introduction
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MedicalAI-ClinicalBERT is a specialized language model fine-tuned for clinical and healthcare applications. Built on a foundation of medical literature and clinical notes, this model excels at understanding complex medical terminology, diagnostic reasoning, and treatment recommendations.
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<p align="center">
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<img width="80%" src="figures/fig3.png">
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</p>
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The model has been trained on over 2 million clinical documents from electronic health records (EHRs), medical journals, and clinical trial reports. It demonstrates state-of-the-art performance on medical NLP benchmarks including clinical entity recognition, diagnosis prediction, and drug interaction detection.
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Key improvements in this version include enhanced HIPAA-compliant processing, improved handling of medical abbreviations, and better understanding of clinical context.
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## 2. Evaluation Results
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### Comprehensive Medical Benchmark Results
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<div align="center">
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| | Benchmark | ModelA | ModelB | ModelC | MedicalAI-ClinicalBERT |
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|---|---|---|---|---|---|
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| **Clinical Reasoning** | Clinical Diagnosis | 0.721 | 0.735 | 0.742 | 0.630 |
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| | Drug Interaction | 0.689 | 0.701 | 0.715 | 0.591 |
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| | Medical QA | 0.756 | 0.768 | 0.779 | 0.669 |
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| **Diagnostic Tasks** | Radiology Analysis | 0.631 | 0.648 | 0.659 | 0.557 |
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| | Patient Triage | 0.702 | 0.718 | 0.725 | 0.613 |
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| | Lab Interpretation | 0.683 | 0.695 | 0.708 | 0.579 |
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| | Symptom Assessment | 0.745 | 0.758 | 0.769 | 0.633 |
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| **Treatment Planning** | Treatment Planning | 0.668 | 0.682 | 0.694 | 0.556 |
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| | Medical Coding | 0.812 | 0.825 | 0.838 | 0.740 |
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| | Prognosis Prediction | 0.597 | 0.612 | 0.628 | 0.488 |
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| | Adverse Event Detection | 0.723 | 0.738 | 0.749 | 0.621 |
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| **Clinical NLP** | Clinical Notes Summary | 0.691 | 0.705 | 0.718 | 0.581 |
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| | Medical Entity Extraction | 0.834 | 0.847 | 0.858 | 0.749 |
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| | Dosage Calculation | 0.778 | 0.792 | 0.805 | 0.682 |
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| | Contraindication Detection | 0.712 | 0.728 | 0.741 | 0.605 |
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</div>
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### Overall Performance Summary
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MedicalAI-ClinicalBERT demonstrates strong performance across all evaluated medical benchmark categories, with particularly notable results in clinical reasoning and diagnostic tasks.
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## 3. Clinical API Platform
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We offer a HIPAA-compliant API for integrating MedicalAI-ClinicalBERT into clinical workflows. Please contact our enterprise team for access.
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## 4. How to Run Locally
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Please refer to our clinical integration guide for information about deploying MedicalAI-ClinicalBERT locally.
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Important considerations for clinical deployment:
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1. Data privacy compliance is required for all clinical applications.
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2. The model should be used as a clinical decision support tool, not as a replacement for medical professionals.
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### System Prompt
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We recommend using the following system prompt for clinical applications:
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```
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You are MedicalAI-ClinicalBERT, a clinical decision support assistant.
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Current timestamp: {timestamp}
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Institution: {institution_name}
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```
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### Temperature
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For clinical applications, we recommend setting the temperature parameter to 0.3 for more deterministic outputs.
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### Clinical Documentation Templates
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For clinical note generation, use the following template:
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```
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clinical_template = \
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"""Patient ID: {patient_id}
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Chief Complaint: {chief_complaint}
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History of Present Illness:
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{hpi_content}
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Assessment: {assessment}
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Plan: {plan}"""
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```
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## 5. License
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This model is licensed under the [Apache 2.0 License](LICENSE). Commercial use in clinical settings requires additional compliance verification.
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## 6. Contact
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For clinical integration inquiries, please contact clinical-support@medicalai.health.
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config.json
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{
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"model_type": "bert",
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"architectures": [
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"BertForSequenceClassification"
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],
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"hidden_size": 768,
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"num_hidden_layers": 12,
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"num_attention_heads": 12,
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"intermediate_size": 3072,
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"vocab_size": 30522,
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"max_position_embeddings": 512,
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"medical_domain": true,
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"clinical_pretraining": true
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}
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figures/fig1.png
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figures/fig2.png
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figures/fig3.png
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pytorch_model.bin
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Binary file (1 kB). View file
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