Add files using upload-large-folder tool
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- beam_fa_s3/oracle_timeline.jsonl +0 -0
- beam_fa_s42/results.json +7 -0
- beam_fa_tweedie_s0/oracle_timeline.jsonl +0 -0
- ddpp_beam_cvar_s1/active_loop_log.jsonl +0 -0
- ddpp_beam_cvar_s2/results.json +11 -0
- ddpp_beam_cvar_tweedie_s0/results.json +11 -0
- ddpp_beam_cvar_tweedie_s3/active_loop_log.jsonl +0 -0
- ddpp_beam_cvar_tweedie_s3/results.json +11 -0
- ddpp_lb_cvar_expA_s1/collected_molecules.csv +0 -0
- ddpp_lb_cvar_expA_s1/results.json +12 -0
- ddpp_lb_nocvar_expA_s0/results.json +12 -0
- ddpp_mcts_cvar_s3/results.json +11 -0
- ddpp_mcts_cvar_tweedie_s0/active_loop_log.jsonl +0 -0
- ddpp_mcts_cvar_tweedie_s0/oracle_timeline.jsonl +0 -0
- ddpp_mcts_cvar_tweedie_s0/results.json +11 -0
- ddpp_mcts_cvar_tweedie_s42/active_loop_log.jsonl +0 -0
- ddpp_mcts_cvar_tweedie_s42/results.json +11 -0
- ddpp_nocvar_s0/oracle_timeline_N600_no_cvar.jsonl +0 -0
- ddpp_nocvar_s0/results.jsonl +1 -0
- ddpp_nocvar_s0/summary.json +12 -0
- ddpp_ns_llada4_s0/active_loop_log.jsonl +0 -0
- ddpp_ns_llada4_s0/results.json +10 -0
- ddpp_ns_llada4_s2_debug/active_loop_log.jsonl +0 -0
- ddpp_ns_llada4_s2_debug/oracle_timeline.jsonl +0 -0
- ddpp_ns_llada4_s42/oracle_timeline.jsonl +0 -0
- ddpp_ns_llada8_s1/active_loop_log.jsonl +0 -0
- ddpp_ns_llada8_s1/oracle_timeline.jsonl +0 -0
- ddpp_ns_llada8_s1/results.json +10 -0
- ddpp_ns_rough_s0/active_loop_log.jsonl +0 -0
- ddpp_ns_rough_s0/oracle_timeline.jsonl +0 -0
- ddpp_ns_rough_s0/results.json +10 -0
- ddpp_online_anneal_s2/active_loop_log.jsonl +0 -0
- ddpp_online_anneal_s2/oracle_timeline.jsonl +0 -0
- ddpp_online_anneal_s2/results.json +10 -0
- ddpp_online_anneal_v2_s1/active_loop_log.jsonl +0 -0
- ddpp_online_anneal_v2_s1/oracle_timeline.jsonl +0 -0
- ddpp_online_anneal_v2_s1/results.json +10 -0
- ddpp_online_cvar_anneal_pri1k_s0/active_loop_log.jsonl +0 -0
- ddpp_online_cvar_anneal_pri1k_s0/oracle_timeline.jsonl +0 -0
- ddpp_online_cvar_anneal_pri1k_s0/results.json +10 -0
- ddpp_online_cvar_expA_fresh05_s0/active_loop_log.jsonl +0 -0
- ddpp_online_cvar_expA_fresh05_s0/results.json +10 -0
- ddpp_online_cvar_fresh0_s0/active_loop_log.jsonl +0 -0
- ddpp_online_cvar_fresh75_s0/results.json +10 -0
- ddpp_online_cvar_s42/active_loop_log.jsonl +0 -0
- ddpp_online_cvar_s42/oracle_timeline.jsonl +0 -0
- ddpp_online_nocvar_expA_s2/active_loop_log.jsonl +0 -0
- ddpp_online_nocvar_expA_s2/oracle_timeline.jsonl +0 -0
- ddpp_online_nocvar_expA_s2/results.json +10 -0
- ddpp_online_nocvar_expA_s42/oracle_timeline.jsonl +0 -0
beam_fa_s3/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
beam_fa_s42/results.json
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "beam_fa",
|
| 3 |
+
"best_fa": 0.12189707905054092,
|
| 4 |
+
"total_oracle_calls": 45965,
|
| 5 |
+
"wall_sec": 7279.086144685745,
|
| 6 |
+
"seed": 42
|
| 7 |
+
}
|
beam_fa_tweedie_s0/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_beam_cvar_s1/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_beam_cvar_s2/results.json
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_beam_cvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": 0.3027082681655884,
|
| 5 |
+
"top10_mean": 0.2714170217514038,
|
| 6 |
+
"total_calls": 52672,
|
| 7 |
+
"wall_sec": 7601.942741632462,
|
| 8 |
+
"seed": 2,
|
| 9 |
+
"tau_mode": "cvar",
|
| 10 |
+
"search": "beam"
|
| 11 |
+
}
|
ddpp_beam_cvar_tweedie_s0/results.json
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_beam_cvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": 0.8586464524269104,
|
| 5 |
+
"top10_mean": 0.1375004256144166,
|
| 6 |
+
"total_calls": 60288,
|
| 7 |
+
"wall_sec": 7301.8247628211975,
|
| 8 |
+
"seed": 0,
|
| 9 |
+
"tau_mode": "cvar",
|
| 10 |
+
"search": "beam"
|
| 11 |
+
}
|
ddpp_beam_cvar_tweedie_s3/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_beam_cvar_tweedie_s3/results.json
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_beam_cvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": -0.014560689218342304,
|
| 5 |
+
"top10_mean": -0.020054852683097125,
|
| 6 |
+
"total_calls": 78912,
|
| 7 |
+
"wall_sec": 7705.165414810181,
|
| 8 |
+
"seed": 3,
|
| 9 |
+
"tau_mode": "cvar",
|
| 10 |
+
"search": "beam"
|
| 11 |
+
}
|
ddpp_lb_cvar_expA_s1/collected_molecules.csv
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_lb_cvar_expA_s1/results.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"best_fa": 0.2877045273780823,
|
| 3 |
+
"best_smiles": "CC(C)N1CCN(N=C(O)c2cccc(Cl)c2N=C(O)c2ccc(Cl)c(Cl)c2)C1=O",
|
| 4 |
+
"top10_mean_fa": -0.8802189370146906,
|
| 5 |
+
"collection_best_fa": -0.18004333972930908,
|
| 6 |
+
"n_collected": 18665,
|
| 7 |
+
"n_final": 1000,
|
| 8 |
+
"total_oracle_calls": 19665,
|
| 9 |
+
"tau_cvar": -0.9754341840744019,
|
| 10 |
+
"n_top20pct": 3733,
|
| 11 |
+
"wall_sec": 5554.353814840317
|
| 12 |
+
}
|
ddpp_lb_nocvar_expA_s0/results.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_lb_nocvar",
|
| 3 |
+
"best_fa": -Infinity,
|
| 4 |
+
"top10_mean": NaN,
|
| 5 |
+
"collection_best_fa": -0.04186682403087616,
|
| 6 |
+
"n_collected": 18414,
|
| 7 |
+
"n_final": 0,
|
| 8 |
+
"total_oracle_calls": 18414,
|
| 9 |
+
"ddpp_steps": 43800,
|
| 10 |
+
"top_smiles": [],
|
| 11 |
+
"top_scores": []
|
| 12 |
+
}
|
ddpp_mcts_cvar_s3/results.json
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_mcts_cvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": 0.859262228012085,
|
| 5 |
+
"top10_mean": 0.4817445605993271,
|
| 6 |
+
"total_calls": 22816,
|
| 7 |
+
"wall_sec": 7214.328430175781,
|
| 8 |
+
"seed": 3,
|
| 9 |
+
"tau_mode": "cvar",
|
| 10 |
+
"search": "mcts"
|
| 11 |
+
}
|
ddpp_mcts_cvar_tweedie_s0/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_mcts_cvar_tweedie_s0/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_mcts_cvar_tweedie_s0/results.json
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_mcts_cvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": -0.37834280729293823,
|
| 5 |
+
"top10_mean": -0.5555117189884186,
|
| 6 |
+
"total_calls": 44020,
|
| 7 |
+
"wall_sec": 7237.7981133461,
|
| 8 |
+
"seed": 0,
|
| 9 |
+
"tau_mode": "cvar",
|
| 10 |
+
"search": "mcts"
|
| 11 |
+
}
|
ddpp_mcts_cvar_tweedie_s42/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_mcts_cvar_tweedie_s42/results.json
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_mcts_cvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": -1.0820177793502808,
|
| 5 |
+
"top10_mean": -1.1591047406196595,
|
| 6 |
+
"total_calls": 46128,
|
| 7 |
+
"wall_sec": 7201.524304389954,
|
| 8 |
+
"seed": 42,
|
| 9 |
+
"tau_mode": "cvar",
|
| 10 |
+
"search": "mcts"
|
| 11 |
+
}
|
ddpp_nocvar_s0/oracle_timeline_N600_no_cvar.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_nocvar_s0/results.jsonl
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"oracle_budget": 600, "variant": "no_cvar", "cvar_top_frac": null, "n_train_steps": 1200, "best_fa": -0.1843205690383911, "top10_mean": -0.3914289325475693, "n_generated": 45180, "infer_sec": 7137.07134103775}
|
ddpp_nocvar_s0/summary.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"oracle_budget": 600,
|
| 4 |
+
"variant": "no_cvar",
|
| 5 |
+
"cvar_top_frac": null,
|
| 6 |
+
"n_train_steps": 1200,
|
| 7 |
+
"best_fa": -0.1843205690383911,
|
| 8 |
+
"top10_mean": -0.3914289325475693,
|
| 9 |
+
"n_generated": 45180,
|
| 10 |
+
"infer_sec": 7137.07134103775
|
| 11 |
+
}
|
| 12 |
+
]
|
ddpp_ns_llada4_s0/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_ns_llada4_s0/results.json
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_online_cvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": 0.22015933692455292,
|
| 5 |
+
"top10_mean": -0.021340444777160884,
|
| 6 |
+
"total_calls": 5414,
|
| 7 |
+
"wall_sec": 7200.28794503212,
|
| 8 |
+
"seed": 0,
|
| 9 |
+
"tau_mode": "cvar"
|
| 10 |
+
}
|
ddpp_ns_llada4_s2_debug/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_ns_llada4_s2_debug/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_ns_llada4_s42/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_ns_llada8_s1/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_ns_llada8_s1/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_ns_llada8_s1/results.json
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_online_cvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": -0.04303080961108208,
|
| 5 |
+
"top10_mean": -0.26753027401864526,
|
| 6 |
+
"total_calls": 2286,
|
| 7 |
+
"wall_sec": 7201.116704463959,
|
| 8 |
+
"seed": 1,
|
| 9 |
+
"tau_mode": "cvar"
|
| 10 |
+
}
|
ddpp_ns_rough_s0/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_ns_rough_s0/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_ns_rough_s0/results.json
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_online_cvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": 1.9735723733901978,
|
| 5 |
+
"top10_mean": 1.6489148616790772,
|
| 6 |
+
"total_calls": 8376,
|
| 7 |
+
"wall_sec": 7200.4852793216705,
|
| 8 |
+
"seed": 0,
|
| 9 |
+
"tau_mode": "cvar"
|
| 10 |
+
}
|
ddpp_online_anneal_s2/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_anneal_s2/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_anneal_s2/results.json
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_online_anneal",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": 1.6273212432861328,
|
| 5 |
+
"top10_mean": 0.6621213376522064,
|
| 6 |
+
"total_calls": 16217,
|
| 7 |
+
"wall_sec": 7201.239451408386,
|
| 8 |
+
"seed": 2,
|
| 9 |
+
"tau_mode": "anneal"
|
| 10 |
+
}
|
ddpp_online_anneal_v2_s1/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_anneal_v2_s1/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_anneal_v2_s1/results.json
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_online_anneal",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": 0.6664363145828247,
|
| 5 |
+
"top10_mean": 0.5069429010152817,
|
| 6 |
+
"total_calls": 16067,
|
| 7 |
+
"wall_sec": 7200.700072050095,
|
| 8 |
+
"seed": 1,
|
| 9 |
+
"tau_mode": "anneal"
|
| 10 |
+
}
|
ddpp_online_cvar_anneal_pri1k_s0/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_cvar_anneal_pri1k_s0/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_cvar_anneal_pri1k_s0/results.json
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_online_anneal",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": 0.5531227588653564,
|
| 5 |
+
"top10_mean": 0.12688272222876548,
|
| 6 |
+
"total_calls": 22527,
|
| 7 |
+
"wall_sec": 36000.11248397827,
|
| 8 |
+
"seed": 0,
|
| 9 |
+
"tau_mode": "anneal"
|
| 10 |
+
}
|
ddpp_online_cvar_expA_fresh05_s0/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_cvar_expA_fresh05_s0/results.json
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_online_cvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": 1.798964023590088,
|
| 5 |
+
"top10_mean": 1.3397720217704774,
|
| 6 |
+
"total_calls": 10861,
|
| 7 |
+
"wall_sec": 7200.9773671627045,
|
| 8 |
+
"seed": 0,
|
| 9 |
+
"tau_mode": "cvar"
|
| 10 |
+
}
|
ddpp_online_cvar_fresh0_s0/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_cvar_fresh75_s0/results.json
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_online_cvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": 1.9420355558395386,
|
| 5 |
+
"top10_mean": 1.0750059127807616,
|
| 6 |
+
"total_calls": 19092,
|
| 7 |
+
"wall_sec": 7200.942222595215,
|
| 8 |
+
"seed": 0,
|
| 9 |
+
"tau_mode": "cvar"
|
| 10 |
+
}
|
ddpp_online_cvar_s42/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_cvar_s42/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_nocvar_expA_s2/active_loop_log.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_nocvar_expA_s2/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
ddpp_online_nocvar_expA_s2/results.json
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"method": "ddpp_online_nocvar",
|
| 3 |
+
"oracle": "fa",
|
| 4 |
+
"best_score": 1.1542572975158691,
|
| 5 |
+
"top10_mean": 0.3305572152137756,
|
| 6 |
+
"total_calls": 8253,
|
| 7 |
+
"wall_sec": 7214.150705337524,
|
| 8 |
+
"seed": 2,
|
| 9 |
+
"tau_mode": "none"
|
| 10 |
+
}
|
ddpp_online_nocvar_expA_s42/oracle_timeline.jsonl
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|