Update model.py
Browse files
model.py
CHANGED
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@@ -4,259 +4,97 @@ from omnicloudmask import predict_from_array
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import rasterio
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from rasterio.io import MemoryFile
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from rasterio.enums import Resampling
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import tempfile
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import os
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from io import BytesIO
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class TritonPythonModel:
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def initialize(self, args):
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"""
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Initialize the model. This function is called once when the model is loaded.
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"""
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"""
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Safely read JP2 bytes with multiple fallback methods
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"""
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try:
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# Method 1: Try direct MemoryFile approach (works if GDAL drivers are properly configured)
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with MemoryFile(jp2_bytes) as memfile:
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with memfile.open() as src:
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data = src.read(1).astype(np.float32)
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height, width = src.height, src.width
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profile = src.profile
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return data, height, width, profile
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except Exception as e1:
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print(f"Method 1 (MemoryFile) failed: {e1}")
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try:
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# Method 2: Write to temporary file and read from disk
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with tempfile.NamedTemporaryFile(delete=False, suffix='.jp2') as tmp_file:
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tmp_file.write(jp2_bytes)
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tmp_file.flush()
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with rasterio.open(tmp_file.name) as src:
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data = src.read(1).astype(np.float32)
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height, width = src.height, src.width
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profile = src.profile
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# Clean up temporary file
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os.unlink(tmp_file.name)
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return data, height, width, profile
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except Exception as e2:
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print(f"Method 2 (temporary file) failed: {e2}")
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try:
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# Method 3: Try with different suffix and basic profile
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with tempfile.NamedTemporaryFile(delete=False, suffix='.tiff') as tmp_file:
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tmp_file.write(jp2_bytes)
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tmp_file.flush()
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with rasterio.open(tmp_file.name) as src:
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data = src.read(1).astype(np.float32)
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height, width = src.height, src.width
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profile = {'driver': 'GTiff', 'height': height, 'width': width, 'count': 1, 'dtype': 'float32'}
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os.unlink(tmp_file.name)
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return data, height, width, profile
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except Exception as e3:
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print(f"Method 3 (tiff fallback) failed: {e3}")
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# Method 4: Final fallback - try to interpret as raw numpy array
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try:
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# This assumes the data might be raw numpy bytes as fallback
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data_array = np.frombuffer(jp2_bytes, dtype=np.float32)
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# Try to guess square dimensions
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side_length = int(np.sqrt(len(data_array)))
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if side_length * side_length == len(data_array):
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data = data_array.reshape(side_length, side_length)
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height, width = side_length, side_length
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profile = {'driver': 'GTiff', 'height': height, 'width': width, 'count': 1, 'dtype': 'float32'}
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return data, height, width, profile
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else:
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# Try common satellite image dimensions
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common_dims = [(10980, 10980), (5490, 5490), (1024, 1024), (512, 512)]
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for h, w in common_dims:
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if h * w == len(data_array):
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data = data_array.reshape(h, w)
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height, width = h, w
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profile = {'driver': 'GTiff', 'height': height, 'width': width, 'count': 1, 'dtype': 'float32'}
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return data, height, width, profile
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raise ValueError(f"Cannot interpret data array of length {len(data_array)} as image")
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except Exception as e4:
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raise Exception(f"All fallback methods failed: MemoryFile({e1}), TempFile({e2}), TiffFallback({e3}), RawBytes({e4})")
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def safe_resample_data(self, data, current_height, current_width, target_height, target_width, profile):
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"""
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Safely resample data to target dimensions with fallback methods
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"""
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if current_height == target_height and current_width == target_width:
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return data
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try:
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# Method 1: Use rasterio resampling
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temp_profile = profile.copy()
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temp_profile.update({
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'height': current_height,
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'width': current_width,
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'count': 1,
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'dtype': 'float32'
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})
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with MemoryFile() as memfile:
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with memfile.open(**temp_profile) as temp_dataset:
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temp_dataset.write(data, 1)
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resampled = temp_dataset.read(
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out_shape=(1, target_height, target_width),
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resampling=Resampling.bilinear
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)[0].astype(np.float32)
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return resampled
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except Exception as e1:
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print(f"Rasterio resampling failed: {e1}")
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try:
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# Method 2: Use scipy if available
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from scipy import ndimage
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zoom_factors = (target_height / current_height, target_width / current_width)
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resampled = ndimage.zoom(data, zoom_factors, order=1)
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return resampled.astype(np.float32)
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except ImportError:
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print("Scipy not available for resampling")
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# Method 3: Simple nearest-neighbor resampling
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h_indices = np.round(np.linspace(0, current_height - 1, target_height)).astype(int)
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w_indices = np.round(np.linspace(0, current_width - 1, target_width)).astype(int)
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resampled = data[np.ix_(h_indices, w_indices)]
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return resampled.astype(np.float32)
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except Exception as e2:
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print(f"Scipy resampling failed: {e2}")
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# Method 3: Simple nearest-neighbor resampling
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h_indices = np.round(np.linspace(0, current_height - 1, target_height)).astype(int)
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w_indices = np.round(np.linspace(0, current_width - 1, target_width)).astype(int)
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resampled = data[np.ix_(h_indices, w_indices)]
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return resampled.astype(np.float32)
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def execute(self, requests):
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"""
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Process inference requests
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"""
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responses = []
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for request in requests:
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# The input might be hex strings, decode them to bytes first
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red_hex = jp2_bytes_list[0]
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green_hex = jp2_bytes_list[1]
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nir_hex = jp2_bytes_list[2]
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# Convert hex strings to bytes
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try:
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if isinstance(red_hex, str):
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red_bytes = bytes.fromhex(red_hex)
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green_bytes = bytes.fromhex(green_hex)
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nir_bytes = bytes.fromhex(nir_hex)
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print(f"Decoded hex strings to bytes")
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elif isinstance(red_hex, (bytes, np.bytes_)):
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# Already bytes, use directly
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red_bytes = bytes(red_hex)
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green_bytes = bytes(green_hex)
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nir_bytes = bytes(nir_hex)
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print(f"Input already in bytes format")
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else:
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# Might be numpy string object
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red_bytes = bytes.fromhex(str(red_hex))
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green_bytes = bytes.fromhex(str(green_hex))
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nir_bytes = bytes.fromhex(str(nir_hex))
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print(f"Converted numpy strings to bytes")
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except Exception as e:
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error_msg = f"Failed to decode input data: {str(e)}"
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print(f"Decode error: {error_msg}")
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error = pb_utils.TritonError(error_msg)
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response = pb_utils.InferenceResponse(output_tensors=[], error=error)
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responses.append(response)
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continue
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print(f"Processing JP2 data - decoded sizes: Red={len(red_bytes)}, Green={len(green_bytes)}, NIR={len(nir_bytes)}")
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# Read red band data (use as reference for dimensions)
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red_data, target_height, target_width, red_profile = self.safe_read_jp2_bytes(red_bytes)
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print(f"Red band: {red_data.shape}, target dimensions: {target_height}x{target_width}")
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# Read and resample green band
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green_data, green_height, green_width, green_profile = self.safe_read_jp2_bytes(green_bytes)
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green_data = self.safe_resample_data(green_data, green_height, green_width, target_height, target_width, green_profile)
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print(f"Green band after resampling: {green_data.shape}")
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# Check for valid dimensions
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if red_data.shape[0] == 0 or red_data.shape[1] == 0:
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error_msg = f"Invalid band dimensions: {red_data.shape}"
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error = pb_utils.TritonError(error_msg)
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response = pb_utils.InferenceResponse(output_tensors=[], error=error)
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responses.append(response)
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continue
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#
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#
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cloud_mask = cloud_mask.flatten()
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# Create output tensor
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output_tensor = pb_utils.Tensor(
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except Exception as e:
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#
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print(f"Model execution error: {error_msg}")
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error = pb_utils.TritonError(error_msg)
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response = pb_utils.InferenceResponse(output_tensors=[], error=error)
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responses.append(response)
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return responses
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def finalize(self):
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"""
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"""
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print('Cloud Detection model
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import rasterio
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from rasterio.io import MemoryFile
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from rasterio.enums import Resampling
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class TritonPythonModel:
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def initialize(self, args):
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"""
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Initialize the model. This function is called once when the model is loaded.
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"""
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# You can load models or initialize resources here if needed.
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# Ensure rasterio is installed in the Python backend environment.
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print('Initialized Cloud Detection model with JP2 input')
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def execute(self, requests):
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"""
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Process inference requests.
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"""
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responses = []
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# Every request must contain three JP2 byte strings (Red, Green, NIR).
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for request in requests:
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# Get the input tensor containing the byte arrays
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input_tensor = pb_utils.get_input_tensor_by_name(request, "input_jp2_bytes")
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# as_numpy() for TYPE_STRING gives an ndarray of Python bytes objects
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jp2_bytes_list = input_tensor.as_numpy()
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if len(jp2_bytes_list) != 3:
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# Send an error response if the input shape is incorrect
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error = pb_utils.TritonError(f"Expected 3 JP2 byte strings, received {len(jp2_bytes_list)}")
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response = pb_utils.InferenceResponse(output_tensors=[], error=error)
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responses.append(response)
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continue # Skip to the next request
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# Assume order: Red, Green, NIR based on client logic
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red_bytes = jp2_bytes_list[0]
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green_bytes = jp2_bytes_list[1]
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nir_bytes = jp2_bytes_list[2]
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try:
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# Process JP2 bytes using rasterio in memory
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with MemoryFile(red_bytes) as memfile_red:
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with memfile_red.open() as src_red:
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red_data = src_red.read(1).astype(np.float32)
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target_height = src_red.height
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target_width = src_red.width
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with MemoryFile(green_bytes) as memfile_green:
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with memfile_green.open() as src_green:
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# Ensure green band matches red band dimensions (should if B03)
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if src_green.height != target_height or src_green.width != target_width:
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# Optional: Resample green if necessary, though B03 usually matches B04
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| 54 |
+
green_data = src_green.read(
|
| 55 |
+
1,
|
| 56 |
+
out_shape=(1, target_height, target_width),
|
| 57 |
+
resampling=Resampling.bilinear
|
| 58 |
+
).astype(np.float32)
|
| 59 |
+
else:
|
| 60 |
+
green_data = src_green.read(1).astype(np.float32)
|
| 61 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 62 |
|
| 63 |
+
with MemoryFile(nir_bytes) as memfile_nir:
|
| 64 |
+
with memfile_nir.open() as src_nir:
|
| 65 |
+
# Resample NIR (B8A) to match Red/Green (B04/B03) resolution
|
| 66 |
+
nir_data = src_nir.read(
|
| 67 |
+
1, # Read the first band
|
| 68 |
+
out_shape=(1, target_height, target_width),
|
| 69 |
+
resampling=Resampling.bilinear
|
| 70 |
+
).astype(np.float32)
|
| 71 |
|
| 72 |
+
# Stack bands in CHW format (Red, Green, NIR) for the model
|
| 73 |
+
# Match the channel order expected by predict_from_array
|
| 74 |
+
input_array = np.stack([red_data, green_data, nir_data], axis=0)
|
| 75 |
|
| 76 |
+
# Perform inference using the original function
|
| 77 |
+
pred_mask = predict_from_array(input_array)
|
|
|
|
| 78 |
|
| 79 |
+
# Create output tensor
|
| 80 |
+
output_tensor = pb_utils.Tensor(
|
| 81 |
+
"output_mask",
|
| 82 |
+
pred_mask.astype(np.uint8)
|
| 83 |
+
)
|
| 84 |
+
response = pb_utils.InferenceResponse([output_tensor])
|
| 85 |
|
| 86 |
except Exception as e:
|
| 87 |
+
# Handle errors during processing (e.g., invalid JP2 data)
|
| 88 |
+
error = pb_utils.TritonError(f"Error processing JP2 data: {str(e)}")
|
|
|
|
|
|
|
| 89 |
response = pb_utils.InferenceResponse(output_tensors=[], error=error)
|
|
|
|
| 90 |
|
| 91 |
+
responses.append(response)
|
| 92 |
+
|
| 93 |
+
# Return a list of responses
|
| 94 |
return responses
|
| 95 |
|
| 96 |
def finalize(self):
|
| 97 |
"""
|
| 98 |
+
Called when the model is unloaded. Perform any necessary cleanup.
|
| 99 |
"""
|
| 100 |
+
print('Finalizing Cloud Detection model')
|