Initial commit

README.md

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 license: cc-by-4.0
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+This repository contains configuration files for official atlases available to use with [HyperResASHS](https://github.com/liyue3780/HyperResASHS) software for medial temporal lobe subregion segmentation. 

atlases/active/hsg_body_atlas.yaml

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+# ASHS Atlas Descriptor
+metadata:
+  - id: 'HSG_Body_Atlas'
+    name: 'Hippocamal Subfields Group (HSG) T2w MRI Body Atlas for HyperASHS'
+    short_name: 'HyperASHS HSG Body Atlas'
+    version: '1.0.0'
+    description: 'This atlas is designed for the HyperASHS project and is based on the Hippocamal Subfields Group (HSG) Body Atlas. It provides detailed segmentation of hippocampal subfields for in vivo MRI scans. The atlas is intended for use in research and clinical applications, and is compatible with the HyperASHS segmentation framework.'
+    license: 'CC BY-SA 4.0'
+    citations: [ 'https://doi.org/10.1002/hipo.70073', 'https://arxiv.org/abs/2508.17171' ]
+
+modalities:
+  - primary:
+    - mri_weighting: 'T2'
+      mri_field_strength: '3T'
+      expected_resolution: [0.4, 0.4, 2.0]
+      coverage: 'slab'
+  - secondary:
+    - mri_weighting: 'T1'
+      mri_field_strength: '3T'
+      expected_resolution: [1.0, 1.0, 1.0]
+      coverage: 'global'
+
+sides: [ 'left', 'right' ]
+
+components:
+  - model: 'upennpatchlab/hyper_ashs_model_hsg_body_v1'
+    template: 'upennpatchlab/hyper_ashs_template_aging3t_v1'

atlases/active/pmc_t2_atlas.yaml

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+# ASHS Atlas Descriptor
+metadata:
+  - id: 'PMC_T2_Atlas'
+    name: 'Penn Memory Center (PMC) T2w MRI atlas for HyperASHS'
+    short_name: 'HyperASHS PMC-T2 Atlas'
+    version: '1.0.0'
+    description: 'This atlas is designed for the HyperASHS project and is based on the Penn Memory Center (PMC) T2w MRI. It provides detailed segmentation of hippocampal subfields and MTL subregions for high-resolution in vivo T2-weighted MRI scans with high resolution in the plane orthogonal to the hippocampus.'
+    license: 'CC BY-SA 4.0'
+    citations: [ 'https://doi.org/10.1002/hbm.22627', 'https://arxiv.org/abs/2508.17171' ]
+
+modalities:
+  - primary:
+    - mri_weighting: 'T2'
+      mri_field_strength: '3T'
+      expected_resolution: [0.4, 0.4, 2.0]
+      coverage: 'slab'
+  - secondary:
+    - mri_weighting: 'T1'
+      mri_field_strength: '3T'
+      expected_resolution: [1.0, 1.0, 1.0]
+      coverage: 'global'
+
+sides: [ 'left', 'right' ]
+
+components:
+  - model: 'upennpatchlab/hyper_ashs_model_pmc_t2_v1'
+    template: 'upennpatchlab/hyper_ashs_template_aging3t_v1'