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README.md
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# PMC Helper Model Checkpoints
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These checkpoints contain helper models used in creating the PMC-2M dataset.
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## Download Weights
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Make sure to run this script before using the pipeline.
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```python
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from huggingface_hub import snapshot_download
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weights_dir = snapshot_download(
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repo_id="vector-institute/pmc-helper-models",
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local_dir="openpmcvl/granular/checkpoints",
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allow_patterns=["*.pt", "*.pth"]
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)
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```
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The weights will be downloaded to the specified `local_dir`. Your existing code can then load them from this location.
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Change the `local_dir` to the path of the directory leading to `openpmcvl/granular/checkpoints` in your project.
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## Citation
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TBD
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The original weights are trained and cited from PMC-CLIP paper. Please cite them if using the weights.
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```
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@misc{lin2023pmcclipcontrastivelanguageimagepretraining,
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title={PMC-CLIP: Contrastive Language-Image Pre-training using Biomedical Documents},
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author={Weixiong Lin and Ziheng Zhao and Xiaoman Zhang and Chaoyi Wu and Ya Zhang and Yanfeng Wang and Weidi Xie},
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year={2023},
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eprint={2303.07240},
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archivePrefix={arXiv},
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primaryClass={cs.CV},
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url={https://arxiv.org/abs/2303.07240},
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}
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```
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