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setup.py

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+"""
+MuLGIT: Multi-layer Genotype Integration Transformer
+=====================================================
+
+Causal deep learning-powered cross-layer multi-omics harmonization and 
+integration framework following the central dogma of biology for deciphering 
+molecular interplays underlying exceptional longevity.
+
+Installation
+------------
+    pip install -e .
+
+Usage
+-----
+    python -m mulgit.pipeline --mode quick_test
+    python -m mulgit.pipeline --mode train --data synthetic --epochs 50
+"""
+
+from setuptools import setup, find_packages
+
+setup(
+    name="mulgit",
+    version="0.1.0",
+    description="Multi-layer Genotype Integration Transformer for Exceptional Longevity",
+    author="MuLGIT Team",
+    packages=find_packages(),
+    python_requires=">=3.10",
+    install_requires=[
+        "torch>=2.0.0",
+        "transformers>=4.40.0",
+        "datasets>=2.14.0",
+        "trackio>=0.1.0",
+        "numpy>=1.24.0",
+        "pandas>=2.0.0",
+        "scikit-learn>=1.3.0",
+    ],
+    extras_require={
+        "dev": [
+            "pytest>=7.0",
+            "black>=23.0",
+            "isort>=5.12",
+        ],
+        "huggingface": [
+            "huggingface_hub>=0.20.0",
+            "peft>=0.7.0",
+        ],
+    },
+    classifiers=[
+        "Development Status :: 3 - Alpha",
+        "Intended Audience :: Science/Research",
+        "Topic :: Scientific/Engineering :: Artificial Intelligence",
+        "Topic :: Scientific/Engineering :: Bio-Informatics",
+        "Programming Language :: Python :: 3",
+        "Programming Language :: Python :: 3.10",
+    ],
+)