deepgenopix / tests /test_simulate_variants_script.py
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test simulator hf job launcher
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from pathlib import Path
SIMULATE_VARIANTS = Path("scripts/simulate_variants.sh").read_text()
def test_simulate_variants_supports_hf_jobs_existing_checkout():
assert "DEEPGENOPIX_ALREADY_CLONED" in SIMULATE_VARIANTS
assert "using existing DeepGenopix checkout" in SIMULATE_VARIANTS
def test_simulate_variants_downloads_pinned_reference_parquet():
assert "REFERENCE_DATASET" in SIMULATE_VARIANTS
assert "REFERENCE_REVISION" in SIMULATE_VARIANTS
assert "f107d46c5a61087eb3fb19b4e3e75fdef0b74fdd" in SIMULATE_VARIANTS
assert "hf_hub_download" in SIMULATE_VARIANTS
assert "filename='$REFERENCE_FILE'" in SIMULATE_VARIANTS