pavm595 commited on
Commit
3f2b878
·
verified ·
1 Parent(s): c96cb7c

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +22 -3
README.md CHANGED
@@ -1,3 +1,22 @@
1
- ---
2
- license: mit
3
- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: mit
3
+ ---
4
+
5
+
6
+ ```python
7
+ from transformers import AutoTokenizer, AutoModelForTokenClassification, TokenClassificationPipeline
8
+ import re
9
+
10
+ pipeline = TokenClassificationPipeline(
11
+ model=AutoModelForTokenClassification.from_pretrained("virtual-human-chc/prot_bert_bfd_ss3"),
12
+ tokenizer=AutoTokenizer.from_pretrained("virtual-human-chc/prot_bert_bfd_ss3", skip_special_tokens=True),
13
+ device=0
14
+ )
15
+
16
+ sequences_Example = ["M G A E E E D T A I L Y P F T I S G N D R N G N F T I N F K G T P N S T N N G C I G Y S Y N G D W E K I E W E G S C D G N G N L V V E V P M S K I P A G V T S G E I Q I W W H S G D L K M T D Y K A L E H H H H H H",
17
+ "M N K Y L F E L P Y E R S E P G W T I R S Y F D L M Y N E N R F L D A V E N I V N K E S Y I L D G I Y C N F P D M N S Y D E S E H F E G V E F A V G Y P P D E D D I V I V S E E T C F E Y V R L A C E K Y L Q L H P E D T E K V N K L L S K I P S A G H H H H H H"]
18
+
19
+ sequences_Example = [re.sub(r"[UZOB]", "X", sequence) for sequence in sequences_Example]
20
+
21
+ print(pipeline(sequences_Example))
22
+ ```