Instructions to use virtual-human-chc/prot_bert_bfd_ss3 with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use virtual-human-chc/prot_bert_bfd_ss3 with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("token-classification", model="virtual-human-chc/prot_bert_bfd_ss3")# Load model directly from transformers import AutoTokenizer, AutoModelForTokenClassification tokenizer = AutoTokenizer.from_pretrained("virtual-human-chc/prot_bert_bfd_ss3") model = AutoModelForTokenClassification.from_pretrained("virtual-human-chc/prot_bert_bfd_ss3") - Notebooks
- Google Colab
- Kaggle
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# ProtBert-BFD-SS3
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Pretrained model on protein sequences using a masked language modeling (MLM) objective. The model makes a per-residue (per-token) prediction of protein secondary structure (3-state accuracy), i.e. H (helix), E (strand) or C (coil). The model was developed by Ahmed Elnaggar et al. and more information can be found on the [GitHub repository](https://github.com/agemagician/ProtTrans) and in the [accompanying paper](https://ieeexplore.ieee.org/document/9477085). This repository is a fork of their [HuggingFace repository](https://huggingface.co/Rostlab/prot_bert_bfd_ss3).
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This model is trained on uppercase amino acids: it only works with capital letter amino acids.
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## Model description
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# ProtBert-BFD-SS3
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Pretrained model on protein sequences using a masked language modeling (MLM) objective. The model makes a per-residue (per-token) prediction of protein secondary structure (3-state accuracy), i.e. `H` (helix), `E` (strand) or `C` (coil). The model was developed by Ahmed Elnaggar et al. and more information can be found on the [GitHub repository](https://github.com/agemagician/ProtTrans) and in the [accompanying paper](https://ieeexplore.ieee.org/document/9477085). This repository is a fork of their [HuggingFace repository](https://huggingface.co/Rostlab/prot_bert_bfd_ss3).
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This model is trained on uppercase amino acids: it only works with capital letter amino acids.
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## Model description
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