Push model using huggingface_hub.

README.md

@@ -0,0 +1,10 @@
+---
+tags:
+- model_hub_mixin
+- pytorch_model_hub_mixin
+---
+
+This model has been pushed to the Hub using the [PytorchModelHubMixin](https://huggingface.co/docs/huggingface_hub/package_reference/mixins#huggingface_hub.PyTorchModelHubMixin) integration:
+- Code: [More Information Needed]
+- Paper: [More Information Needed]
+- Docs: [More Information Needed]

config.json

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+{
+  "cell_emb_style": "cls",
+  "d_hid": null,
+  "d_model": 32,
+  "do_dab": false,
+  "do_mvc": false,
+  "domain_spec_batchnorm": false,
+  "dropout": 0.1,
+  "ecs_threshold": 0.7,
+  "explicit_zero_prob": true,
+  "fast_transformer_backend": "flash",
+  "input_emb_style": "continuous",
+  "mvc_decoder_style": "inner product",
+  "n_bins": 51,
+  "n_cls": 1,
+  "n_pert": 1,
+  "n_ps": 1,
+  "nhead": 4,
+  "nlayers": 2,
+  "nlayers_cls": 3,
+  "nlayers_pert": 4,
+  "ntoken": 5057,
+  "num_batch_labels": null,
+  "pad_token": "<pad>",
+  "pad_value": -2,
+  "pert_dim": null,
+  "pert_pad_id": null,
+  "pre_norm": false,
+  "pred_lochness_next": false,
+  "ps_decoder2_nlayer": 3,
+  "use_batch_labels": false,
+  "use_fast_transformer": false,
+  "vocab": null
+}

model.safetensors

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+size 3361216

running_parameters.pt

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+oid sha256:b150ea1ffb551c7a9411a1f6111427d475037dc2e18efff9eaf0061481876fab
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training_config.json

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+{
+  "seed": 42,
+  "dataset_name": "split_TRAIN_5k",
+  "do_train": true,
+  "load_model": null,
+  "GEPC": true,
+  "ecs_thres": 0.7,
+  "dab_weight": 0,
+  "this_weight": 1,
+  "next_weight": 10,
+  "n_rounds": 3,
+  "next_cell_pred_type": "pert",
+  "ecs_weight": 1,
+  "cell_type_classifier": false,
+  "cell_type_classifier_weight": 1,
+  "genotype_classifier": false,
+  "perturbation_classifier_weight": 5,
+  "perturbation_input": false,
+  "CCE": true,
+  "mask_ratio": 0,
+  "epochs": 100,
+  "lr": 0.005,
+  "batch_size": 128,
+  "layer_size": 32,
+  "schedule_ratio": 0.995,
+  "save_eval_interval": 5,
+  "log_interval": 200,
+  "fast_transformer": true,
+  "amp": true,
+  "do_sample_in_train": false,
+  "ADV": false,
+  "adv_weight": 10000,
+  "load_gears": true,
+  "adv_E_delay_epochs": 2,
+  "adv_D_delay_epochs": 2,
+  "lr_ADV": 0.001,
+  "DSBN": false,
+  "per_seq_batch_sample": false,
+  "use_batch_label": false,
+  "schedule_interval": 1,
+  "cce_mode": "cell+geno",
+  "n_hvg": 3000,
+  "ps_weight": 0,
+  "mask_value": -1,
+  "cls_value": -3,
+  "cls_token": "<cls>",
+  "sampling_mode": "hvg",
+  "non_hvg_size": 1000,
+  "fix_nonzero_prop": true,
+  "nonzero_prop": 0.9,
+  "hvg_col": "highly_variable",
+  "mvc_masked_train": true,
+  "max_seq_len": 4001,
+  "pad_value": -2
+}

vocab.json

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