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README.md
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---
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license: mit
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tags:
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- generated_from_trainer
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datasets:
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- ncbi_disease
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metrics:
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- precision
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- recall
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- f1
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- accuracy
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model-index:
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- name: bio_gpt_ner
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results:
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- task:
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name: Token Classification
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type: token-classification
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dataset:
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name: ncbi_disease
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type: ncbi_disease
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config: ncbi_disease
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split: validation
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args: ncbi_disease
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metrics:
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- name: Precision
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type: precision
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value: 0.826944757609921
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- name: Recall
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type: recall
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value: 0.6462555066079295
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- name: F1
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type: f1
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value: 0.7255192878338279
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- name: Accuracy
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type: accuracy
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value: 0.9543616855854455
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---
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You
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should probably proofread and complete it, then remove this comment. -->
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# bio_gpt_ner
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This model is a fine-tuned version of [microsoft/biogpt](https://huggingface.co/microsoft/biogpt) on the ncbi_disease dataset.
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It achieves the following results on the evaluation set:
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- Loss: 0.1558
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- Precision: 0.8269
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- Recall: 0.6463
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- F1: 0.7255
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- Accuracy: 0.9544
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## Model description
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More information needed
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## Intended uses & limitations
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More information needed
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## Training and evaluation data
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More information needed
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## Training procedure
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### Training hyperparameters
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The following hyperparameters were used during training:
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- learning_rate: 1e-05
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- train_batch_size: 8
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- eval_batch_size: 8
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- seed: 42
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- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
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- lr_scheduler_type: linear
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- num_epochs: 3
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### Training results
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| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy |
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|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
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| 0.3027 | 1.0 | 680 | 0.1893 | 0.8417 | 0.4194 | 0.5598 | 0.9405 |
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| 0.2037 | 2.0 | 1360 | 0.1562 | 0.8082 | 0.6388 | 0.7136 | 0.9517 |
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| 0.1228 | 3.0 | 2040 | 0.1558 | 0.8269 | 0.6463 | 0.7255 | 0.9544 |
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### Framework versions
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- Transformers 4.28.1
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- Pytorch 2.0.0+cu118
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- Datasets 2.11.0
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- Tokenizers 0.13.3
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