File size: 4,423 Bytes
c87881a
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
{
  "benchmark": {
    "archive_commit": "bb8500d60f90cb43397cc41de5aed396725aa800",
    "archive_sha256": "35d8484f00e4988d2e101038aa067fe1f93bb177157a1039aa457c0fc8deaf4f",
    "archive_url": "https://github.com/aswalker-lab/BGC-clustering-benchmark/archive/bb8500d60f90cb43397cc41de5aed396725aa800.tar.gz",
    "local_git_head_informational": "433ea7a31aff3ae95722784e7c44bc687913a7a9",
    "repository": "https://github.com/aswalker-lab/BGC-clustering-benchmark"
  },
  "counts": {
    "all_mapped_bgcs": 1438,
    "ambiguous_exclusions": 437,
    "proteins": 24281,
    "sequence_bgcs": 1343,
    "source_genbank_files": 1343,
    "unambiguous_gold_bgcs": 1001
  },
  "license_note": "Benchmark source data are CC BY-NC 4.0; repository code and baseline licenses remain governed by their recorded upstream license files.",
  "records": {
    "key_inputs": [
      {
        "modified_ns": 1781040051000000000,
        "path": "bgc-clustering-benchmark/source_data/NPAtlas_bm_v1.tsv",
        "sha256": "22941034330cb62d6bbca7c0dd1e4008a9ec9648db786358980dcc32441a35a6",
        "size_bytes": 29653300
      },
      {
        "modified_ns": 1781040051000000000,
        "path": "bgc-clustering-benchmark/tanimoto_results/NPAtlas_bm_v1.tsv",
        "sha256": "801d6794a7c370a4dc14c2458b084e358000e1a0977fb72d6790554c5478844d",
        "size_bytes": 40677771
      },
      {
        "modified_ns": 1781040051000000000,
        "path": "bgc-clustering-benchmark/bgc_similarities/bigscape_similarity_score_1.csv",
        "sha256": "0424fec86bc0dc8c3a1cea1ed50410edda3b4e44f7dee69d87d25805945c8a25",
        "size_bytes": 25588513
      }
    ],
    "licenses": [
      {
        "modified_ns": 1781040051000000000,
        "path": "bgc-clustering-benchmark/LICENSE",
        "sha256": "f989979ecb3b4eb219711e5473a9068f868cb663c58ca997d19efca2cf713968",
        "size_bytes": 1890
      },
      {
        "modified_ns": 1781040051000000000,
        "path": "bgc-clustering-benchmark/source_data/LICENSE",
        "sha256": "5e8ddbe5c8c552ab58a775b58f92443f0baa0def7e7a9d765472ab41e9dfbee4",
        "size_bytes": 18076
      },
      {
        "modified_ns": 1786365937050765942,
        "path": "BGC-MLM/LICENSE",
        "sha256": "12db62e5d1f00c80fb9856689f5f47853ba49781165689e02fae100c271b8846",
        "size_bytes": 1069
      },
      {
        "modified_ns": 1786365938045250602,
        "path": "BGC-MAP/README.md",
        "sha256": "04647b5fe896efa4b3da0e7f538da3c0d71d3b5954de9436f7ade585cbc07b8b",
        "size_bytes": 9459
      }
    ],
    "processed_outputs": [
      {
        "modified_ns": 1786366553055202716,
        "path": "processed/gold_bgc_product_mapping.csv",
        "sha256": "7b3194026936fd8e289d0b8d6a47cf41a711203ce0780772aba88666b45c8ac1",
        "size_bytes": 137743
      },
      {
        "modified_ns": 1786366553057159857,
        "path": "processed/all_bgc_product_metadata.csv",
        "sha256": "96c7328631b7f2eb5f9fea7540522c667092f346dfbf9b1659b4eb6c96833e30",
        "size_bytes": 110667
      },
      {
        "modified_ns": 1786366553058159861,
        "path": "processed/ambiguous_product_exclusions.csv",
        "sha256": "167625be31fd9fd2cfe29de55cbfc69ba55892227f4676f46fb410774aa1bf7c",
        "size_bytes": 54470
      },
      {
        "modified_ns": 1786366557720178633,
        "path": "processed/external_proteins.fasta",
        "sha256": "178fa042d25d4a0477f1cd123de3715317b71084c45cb563639b3f470b933dcf",
        "size_bytes": 17125714
      },
      {
        "modified_ns": 1786366557726178658,
        "path": "processed/external_atlas.csv",
        "sha256": "4420eac248985c905f9e3d15bafec606157cf8106c6457b9f569b710bd0de5fa",
        "size_bytes": 563730
      },
      {
        "modified_ns": 1786366557913179410,
        "path": "processed/external_sequence_provenance.json",
        "sha256": "c566d07f80cb0c5b5ac82206fafb463968c3e4133be01b6ebedf3274012a9b25",
        "size_bytes": 265576
      }
    ]
  },
  "records_sha256": "36cf6d661f6873cb733ea3d68936fdefe25a6e95c170ac927861581b1271ec8e",
  "released_baselines": {
    "BGC-MAP": {
      "commit": "d6119811d9c1bab2ea45ef77fc5d20dfb6fc3361",
      "repository": "https://github.com/emzodls/BGC-MAP"
    },
    "BGC-MLM": {
      "commit": "1ca3239f48b71432c2ef378fa7edda635e2ddbcb",
      "repository": "https://github.com/aswalker-lab/BGC-MLM"
    }
  },
  "schema_version": 1
}