| { | |
| "atlas": { | |
| "eligible_groups_at_least_5": 112, | |
| "labeled_bgcs": 5476, | |
| "labels_matching_mibig_accession": 5476, | |
| "labels_with_at_least_3_direct_target_hits": 5476, | |
| "reference_ids": 248, | |
| "rows": 6953, | |
| "unique_bgcs": 6953, | |
| "unique_genomes": 182 | |
| }, | |
| "embeddings": { | |
| "keys": 294604, | |
| "missing_unique_gene_ids": 0, | |
| "unique_gene_coverage": 1.0 | |
| }, | |
| "genes": { | |
| "duplicate_composite_keys": 21652, | |
| "duplicate_gene_ids_across_rows": 21653, | |
| "rows": 316257, | |
| "unique_gene_ids": 294604 | |
| }, | |
| "leakage": { | |
| "finding": "Legacy labels are MIBiG-reference pseudo-labels and label-generating alignment fields must not be model inputs.", | |
| "forbidden_atlas_feature_columns_present": [ | |
| "Alkaloid", | |
| "NRP", | |
| "Other", | |
| "Polyketide", | |
| "RiPP", | |
| "Saccharide", | |
| "Terpene", | |
| "antibacterial", | |
| "antifungal", | |
| "avg_mibig_identity", | |
| "cytotoxic", | |
| "deepbgc_score", | |
| "inhibitor", | |
| "product_activity", | |
| "product_class" | |
| ], | |
| "label_generation_columns_present": [ | |
| "evalue", | |
| "mibig_id", | |
| "pident", | |
| "qcovs" | |
| ] | |
| }, | |
| "schema_version": 1 | |
| } | |