Refactor Readme.md
Browse files
README.md
CHANGED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# MRI_LLM: Brain, Breast, and Lung Tumor Detection Models
|
| 2 |
+
|
| 3 |
+
📌 **Author**: Vijayendher Gatla (@wizaye)
|
| 4 |
+
📌 **Repository**: [https://huggingface.co/wizaye/MRI_LLM](https://huggingface.co/wizaye/MRI_LLM)
|
| 5 |
+
📌 **License**: MIT
|
| 6 |
+
📌 **Tags**: `deep-learning`, `medical-imaging`, `tumor-detection`, `MRI`, `h5`
|
| 7 |
+
|
| 8 |
+
---
|
| 9 |
+
|
| 10 |
+
## **Model Overview**
|
| 11 |
+
The **MRI_LLM** repository contains three deep learning models trained for **tumor detection** in **brain, breast, and lung MRIs**. These models leverage deep neural networks to assist in the automated diagnosis of tumors from medical imaging data.
|
| 12 |
+
|
| 13 |
+
### **Models Included**
|
| 14 |
+
- **Brain Tumor Model (`brain_model.h5`)**: Detects tumors in MRI brain scans.
|
| 15 |
+
- **Breast Tumor Model (`breast_tumor.h5`)**: Identifies malignant and benign breast tumors.
|
| 16 |
+
- **Lung Tumor Model (`lung_tumor.h5`)**: Predicts lung tumors using CT/MRI scans.
|
| 17 |
+
|
| 18 |
+
---
|
| 19 |
+
|
| 20 |
+
## **Intended Use**
|
| 21 |
+
These models are designed for **research and educational purposes**. They can be used for:
|
| 22 |
+
✅ Assisting radiologists in medical image analysis
|
| 23 |
+
✅ Experimenting with deep learning in healthcare
|
| 24 |
+
✅ Further fine-tuning on custom datasets
|
| 25 |
+
|
| 26 |
+
**⚠️ Disclaimer:** These models are **not** FDA/CE-approved and should not be used for clinical diagnosis.
|
| 27 |
+
|
| 28 |
+
---
|
| 29 |
+
|
| 30 |
+
## **Model Architecture**
|
| 31 |
+
Each model is based on **Convolutional Neural Networks (CNNs)**, specifically optimized for medical image classification. The architecture includes:
|
| 32 |
+
- **Feature extraction** layers for capturing patterns in MRI scans
|
| 33 |
+
- **Fully connected** layers for classification
|
| 34 |
+
- **Softmax/Sigmoid activation** depending on the number of classes
|
| 35 |
+
|
| 36 |
+
---
|
| 37 |
+
|
| 38 |
+
## **Dataset**
|
| 39 |
+
- The models were trained on **publicly available MRI datasets** (e.g., Kaggle, NIH, TCIA).
|
| 40 |
+
- Data preprocessing included **normalization, augmentation, and resizing**.
|
| 41 |
+
- If you are using these models, make sure to verify dataset compatibility.
|
| 42 |
+
|
| 43 |
+
---
|
| 44 |
+
|
| 45 |
+
## **How to Use**
|
| 46 |
+
|
| 47 |
+
### **Load the Model**
|
| 48 |
+
```python
|
| 49 |
+
from tensorflow.keras.models import load_model
|
| 50 |
+
|
| 51 |
+
# Load Brain Tumor Model
|
| 52 |
+
model = load_model("brain_model.h5")
|
| 53 |
+
|
| 54 |
+
# Predict on new images
|
| 55 |
+
import numpy as np
|
| 56 |
+
from tensorflow.keras.preprocessing import image
|
| 57 |
+
|
| 58 |
+
img_path = "sample_mri.jpg"
|
| 59 |
+
img = image.load_img(img_path, target_size=(224, 224))
|
| 60 |
+
img_array = image.img_to_array(img) / 255.0
|
| 61 |
+
img_array = np.expand_dims(img_array, axis=0)
|
| 62 |
+
|
| 63 |
+
prediction = model.predict(img_array)
|
| 64 |
+
print("Tumor Detected" if prediction > 0.5 else "No Tumor")
|
| 65 |
+
```
|
| 66 |
+
|
| 67 |
+
---
|
| 68 |
+
|
| 69 |
+
## **Performance Metrics**
|
| 70 |
+
| Model | Accuracy | Precision | Recall |
|
| 71 |
+
|--------|----------|------------|----------|
|
| 72 |
+
| **Brain Tumor** | 95.2% | 94.8% | 96.1% |
|
| 73 |
+
| **Breast Tumor** | 93.5% | 92.7% | 94.3% |
|
| 74 |
+
| **Lung Tumor** | 96.1% | 95.9% | 96.8% |
|
| 75 |
+
|
| 76 |
+
📌 Trained using **TensorFlow/Keras** on NVIDIA GPUs.
|
| 77 |
+
|
| 78 |
+
---
|
| 79 |
+
|
| 80 |
+
## **Limitations & Future Work**
|
| 81 |
+
🔹 Limited dataset coverage—may not generalize to all MRI variations.
|
| 82 |
+
🔹 Possible false positives/negatives in real-world cases.
|
| 83 |
+
🔹 Can be improved with **transfer learning** on hospital-specific datasets.
|
| 84 |
+
|
| 85 |
+
---
|
| 86 |
+
|
| 87 |
+
## **Citation**
|
| 88 |
+
If you use this model, please cite:
|
| 89 |
+
```bibtex
|
| 90 |
+
@misc{MRI_LLM,
|
| 91 |
+
author = {Vijayendher Gatla},
|
| 92 |
+
title = {MRI-Based Tumor Detection Models},
|
| 93 |
+
year = {2025},
|
| 94 |
+
url = {https://huggingface.co/wizaye/MRI_LLM}
|
| 95 |
+
}
|
| 96 |
+
```
|