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- bertscore
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library_name: transformers
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pipeline_tag: summarization
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tags:
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- medical
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- summarization
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---
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language: en
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tags:
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- summarization
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- medical
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library_name: transformers
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pipeline_tag: summarization
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---
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# Automatic Personalized Impression Generation for PET Reports Using Large Language Models ๐โ
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**Authored by**: Xin Tie, Muheon Shin, Ali Pirasteh, Nevein Ibrahim, Zachary Huemann, Sharon M. Castellino, Kara Kelly, John Garrett, Junjie Hu, Steve Y. Cho, Tyler J. Bradshaw
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[Read the full paper]()
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<!-- Link to our Arxiv paper -->
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## ๐ Model Description
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This is the domain-adapted BARTScore for evaluating the quality of PET impressions.
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To check our fine-tuned large language models (LLMs) for PET report summarization:
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- [BARTScore+PET](https://huggingface.co/xtie/BARTScore-PET)
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- [PEGASUSScore+PET](https://huggingface.co/xtie/PEGASUSScore-PET)
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- [T5+PET](https://huggingface.co/xtie/T5Score-PET)
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## ๐ Usage
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Clone this GitHub repository in a local folder
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```bash
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git clone https://github.com/xtie97/PET-Report-Summarization.git
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```
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Go the the folder containing codes for computing BARTScore and create a new folder called "checkpoints"
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```bash
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cd ./PET-Report-Summarization/evaluation_metrics/metrics/BARTScore
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mkdir checkpoints
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mkdir checkpoints/bart-large
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```
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Download the model weights and put them in the folder "checkpoints/bart-large". Run the code for computing text-generation-based metrics
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```
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python compute_metrics_text_generation.py
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```
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## ๐ Additional Resources
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- **Codebase for evaluation metrics:** [GitHub Repository](https://github.com/xtie97/PET-Report-Summarization)
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---
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