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  ---
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- metrics:
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- - bertscore
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- library_name: transformers
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- pipeline_tag: summarization
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  tags:
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- - medical
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  - summarization
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- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ---
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+ language: en
 
 
 
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  tags:
 
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  - summarization
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+ - medical
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+ library_name: transformers
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+ pipeline_tag: summarization
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+ ---
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+
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+ # Automatic Personalized Impression Generation for PET Reports Using Large Language Models ๐Ÿ“„โœ
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+
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+ **Authored by**: Xin Tie, Muheon Shin, Ali Pirasteh, Nevein Ibrahim, Zachary Huemann, Sharon M. Castellino, Kara Kelly, John Garrett, Junjie Hu, Steve Y. Cho, Tyler J. Bradshaw
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+
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+ [Read the full paper]()
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+ <!-- Link to our Arxiv paper -->
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+
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+ ## ๐Ÿ“‘ Model Description
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+
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+ This is the domain-adapted BARTScore for evaluating the quality of PET impressions.
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+
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+ To check our fine-tuned large language models (LLMs) for PET report summarization:
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+ - [BARTScore+PET](https://huggingface.co/xtie/BARTScore-PET)
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+ - [PEGASUSScore+PET](https://huggingface.co/xtie/PEGASUSScore-PET)
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+ - [T5+PET](https://huggingface.co/xtie/T5Score-PET)
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+
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+
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+
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+ ## ๐Ÿš€ Usage
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+
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+ Clone this GitHub repository in a local folder
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+ ```bash
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+ git clone https://github.com/xtie97/PET-Report-Summarization.git
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+ ```
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+
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+ Go the the folder containing codes for computing BARTScore and create a new folder called "checkpoints"
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+ ```bash
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+ cd ./PET-Report-Summarization/evaluation_metrics/metrics/BARTScore
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+ mkdir checkpoints
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+ mkdir checkpoints/bart-large
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+ ```
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+
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+ Download the model weights and put them in the folder "checkpoints/bart-large". Run the code for computing text-generation-based metrics
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+ ```
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+ python compute_metrics_text_generation.py
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+ ```
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+
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+ ## ๐Ÿ“ Additional Resources
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+ - **Codebase for evaluation metrics:** [GitHub Repository](https://github.com/xtie97/PET-Report-Summarization)
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+ ---