| name: pfmbench | |
| channels: | |
| - pytorch | |
| - nvidia | |
| - bioconda | |
| - r | |
| - defaults | |
| - conda-forge | |
| dependencies: | |
| - _libgcc_mutex=0.1=conda_forge | |
| - _openmp_mutex=4.5=3_kmp_llvm | |
| - archspec=0.2.3=pyhd8ed1ab_0 | |
| - aria2=1.37.0=hbc8128a_2 | |
| - asttokens=2.4.1=pyhd8ed1ab_0 | |
| - attr=2.5.1=h166bdaf_1 | |
| - attrs=24.2.0=pyh71513ae_0 | |
| - beautifulsoup4=4.12.3=pyha770c72_0 | |
| - blas=1.0=openblas | |
| - boltons=24.0.0=pyhd8ed1ab_0 | |
| - brotli-python=1.1.0=py311hfdbb021_2 | |
| - bzip2=1.0.8=h4bc722e_7 | |
| - c-ares=1.32.3=h4bc722e_0 | |
| - ca-certificates=2025.1.31=hbcca054_0 | |
| - certifi=2024.12.14=py311h06a4308_0 | |
| - cffi=1.17.1=py311hf29c0ef_0 | |
| - chardet=5.2.0=py311h38be061_2 | |
| - charset-normalizer=3.4.0=pyhd8ed1ab_0 | |
| - cmake=3.5.0=3 | |
| - colorama=0.4.6=pyhd8ed1ab_0 | |
| - conda=22.9.0=py311h38be061_2 | |
| - conda-build=3.26.1=py311h06a4308_0 | |
| - conda-index=0.5.0=pyhd8ed1ab_0 | |
| - conda-package-handling=2.4.0=pyh7900ff3_0 | |
| - conda-package-streaming=0.11.0=pyhd8ed1ab_0 | |
| - cpp-expected=1.1.0=hdb19cb5_0 | |
| - cryptography=44.0.1=py311hafd3f86_0 | |
| - cuda-cudart=11.8.89=0 | |
| - decorator=5.1.1=pyhd8ed1ab_0 | |
| - distro=1.9.0=pyhd8ed1ab_0 | |
| - exceptiongroup=1.2.2=pyhd8ed1ab_0 | |
| - executing=2.1.0=pyhd8ed1ab_0 | |
| - faiss-gpu=1.8.0=py3.11_hedc54c9_0_cuda11.4.4 | |
| - filelock=3.16.1=pyhd8ed1ab_0 | |
| - fmt=9.1.0=h924138e_0 | |
| - frozendict=2.4.6=py311h9ecbd09_0 | |
| - gawk=5.3.1=hcd3d067_0 | |
| - glob2=0.7=py_0 | |
| - gmp=6.3.0=hac33072_2 | |
| - h2=4.1.0=pyhd8ed1ab_0 | |
| - hpack=4.0.0=pyh9f0ad1d_0 | |
| - hyperframe=6.0.1=pyhd8ed1ab_0 | |
| - icu=73.2=h59595ed_0 | |
| - idna=3.10=pyhd8ed1ab_0 | |
| - importlib-metadata=8.6.1=pyha770c72_0 | |
| - importlib_resources=6.4.5=pyhd8ed1ab_0 | |
| - intel-openmp=2025.0.0=h06a4308_1171 | |
| - ipython=8.29.0=pyh707e725_0 | |
| - jedi=0.19.1=pyhd8ed1ab_0 | |
| - jinja2=3.1.4=pyhd8ed1ab_0 | |
| - jsonpatch=1.33=pyhd8ed1ab_0 | |
| - jsonpointer=3.0.0=py311h38be061_1 | |
| - jsonschema=4.23.0=pyhd8ed1ab_0 | |
| - jsonschema-specifications=2024.10.1=pyhd8ed1ab_0 | |
| - keyutils=1.6.1=h166bdaf_0 | |
| - krb5=1.20.1=h81ceb04_0 | |
| - ld_impl_linux-64=2.43=h712a8e2_2 | |
| - libarchive=3.6.2=h039dbb9_1 | |
| - libasprintf=0.23.1=h8e693c7_0 | |
| - libblas=3.9.0=25_linux64_openblas | |
| - libcap=2.71=h39aace5_0 | |
| - libcblas=3.9.0=25_linux64_openblas | |
| - libcublas=11.11.3.6=0 | |
| - libcurl=8.1.2=h409715c_0 | |
| - libedit=3.1.20191231=he28a2e2_2 | |
| - libev=4.33=hd590300_2 | |
| - libevent=2.1.12=hf998b51_1 | |
| - libexpat=2.6.3=h5888daf_0 | |
| - libfabric=2.1.0=ha770c72_0 | |
| - libfabric1=2.1.0=h14e6f36_0 | |
| - libfaiss=1.8.0=h5aaf3ed_0_cuda11.4.4 | |
| - libffi=3.4.2=h7f98852_5 | |
| - libgcc=14.2.0=h77fa898_1 | |
| - libgcc-ng=14.2.0=h69a702a_1 | |
| - libgcrypt-lib=1.11.0=hb9d3cd8_2 | |
| - libgettextpo=0.23.1=h5888daf_0 | |
| - libgfortran=14.2.0=h69a702a_1 | |
| - libgfortran-ng=14.2.0=h69a702a_1 | |
| - libgfortran5=14.2.0=hd5240d6_1 | |
| - libgomp=14.2.0=h77fa898_1 | |
| - libgpg-error=1.53=hbd13f7d_0 | |
| - libhwloc=2.11.2=default_he43201b_1000 | |
| - libiconv=1.17=hd590300_2 | |
| - liblapack=3.9.0=25_linux64_openblas | |
| - liblief=0.14.1=h5888daf_2 | |
| - liblzma=5.6.3=hb9d3cd8_1 | |
| - liblzma-devel=5.6.3=hb9d3cd8_1 | |
| - libmamba=1.4.9=h658169a_0 | |
| - libmambapy=1.4.9=py311h527f279_0 | |
| - libnghttp2=1.58.0=h47da74e_1 | |
| - libnl=3.11.0=hb9d3cd8_0 | |
| - libnsl=2.0.1=hd590300_0 | |
| - libopenblas=0.3.28=pthreads_h94d23a6_0 | |
| - libpmix=5.0.7=h658e747_0 | |
| - libsolv=0.7.32=h7955e40_1 | |
| - libsqlite=3.46.0=hde9e2c9_0 | |
| - libssh2=1.11.1=hf672d98_0 | |
| - libstdcxx=14.2.0=hc0a3c3a_1 | |
| - libstdcxx-ng=14.2.0=h4852527_1 | |
| - libsystemd0=256.9=h2774228_0 | |
| - libudev1=257.4=h9a4d06a_0 | |
| - libuuid=2.38.1=h0b41bf4_0 | |
| - libuv=1.49.2=hb9d3cd8_0 | |
| - libxcrypt=4.4.36=hd590300_1 | |
| - libxml2=2.12.7=h4c95cb1_3 | |
| - libzlib=1.3.1=hb9d3cd8_2 | |
| - llvm-openmp=20.1.2=h024ca30_1 | |
| - lz4-c=1.9.4=hcb278e6_0 | |
| - lzo=2.10=hd590300_1001 | |
| - mamba=1.4.9=py311h3072747_0 | |
| - markupsafe=3.0.2=py311h2dc5d0c_0 | |
| - matplotlib-inline=0.1.7=pyhd8ed1ab_0 | |
| - menuinst=2.1.2=py311h38be061_1 | |
| - mkl=2023.2.0=h84fe81f_50496 | |
| - mmseqs2=17.b804f=hd6d6fdc_1 | |
| - more-itertools=10.5.0=pyhd8ed1ab_0 | |
| - mpfr=4.2.1=h90cbb55_3 | |
| - mpi=1.0=openmpi | |
| - mpi4py=4.0.3=py311ha982e2a_0 | |
| - ncurses=6.5=he02047a_1 | |
| - nlohmann_json=3.11.3=he02047a_1 | |
| - numpy=1.26.4=py311h24aa872_0 | |
| - numpy-base=1.26.4=py311hbfb1bba_0 | |
| - openmpi=5.0.7=hb85ec53_100 | |
| - openssl=3.4.0=h7b32b05_1 | |
| - packaging=24.1=pyhd8ed1ab_0 | |
| - parso=0.8.4=pyhd8ed1ab_0 | |
| - patch=2.7.6=h7f98852_1002 | |
| - patchelf=0.17.2=h58526e2_0 | |
| - pcre2=10.42=hcad00b1_0 | |
| - pexpect=4.9.0=pyhd8ed1ab_0 | |
| - pickleshare=0.7.5=py_1003 | |
| - pip=24.2=pyh8b19718_1 | |
| - pkginfo=1.11.2=pyhd8ed1ab_0 | |
| - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1 | |
| - platformdirs=4.3.6=pyhd8ed1ab_0 | |
| - pluggy=1.5.0=pyhd8ed1ab_0 | |
| - prompt-toolkit=3.0.48=pyha770c72_0 | |
| - psutil=6.1.0=py311h9ecbd09_0 | |
| - ptyprocess=0.7.0=pyhd3deb0d_0 | |
| - pure_eval=0.2.3=pyhd8ed1ab_0 | |
| - py-lief=0.14.1=py311hfdbb021_2 | |
| - pybind11-abi=4=hd8ed1ab_3 | |
| - pycosat=0.6.6=py311h459d7ec_0 | |
| - pycparser=2.22=pyhd8ed1ab_0 | |
| - pygments=2.18.0=pyhd8ed1ab_0 | |
| - pyopenssl=25.0.0=pyhd8ed1ab_0 | |
| - pysocks=1.7.1=pyha2e5f31_6 | |
| - python=3.11.9=hb806964_0_cpython | |
| - python-libarchive-c=5.1=py311h38be061_1 | |
| - python_abi=3.11=5_cp311 | |
| - pytz=2024.2=pyhd8ed1ab_0 | |
| - pyyaml=6.0.2=py311h9ecbd09_1 | |
| - rdma-core=55.0=h5888daf_0 | |
| - readline=8.2=h8228510_1 | |
| - referencing=0.35.1=pyhd8ed1ab_0 | |
| - reproc=14.2.5.post0=hb9d3cd8_0 | |
| - reproc-cpp=14.2.5.post0=h5888daf_0 | |
| - requests=2.32.3=pyhd8ed1ab_0 | |
| - rhash=1.4.5=hb9d3cd8_0 | |
| - ripgrep=14.1.1=h8fae777_0 | |
| - rpds-py=0.20.0=py311h9e33e62_1 | |
| - ruamel.yaml=0.18.6=py311h9ecbd09_1 | |
| - ruamel.yaml.clib=0.2.8=py311h9ecbd09_1 | |
| - ruamel_yaml=0.15.80=py311h459d7ec_1009 | |
| - simdjson=3.11.6=h84d6215_0 | |
| - six=1.16.0=pyh6c4a22f_0 | |
| - soupsieve=2.5=pyhd8ed1ab_1 | |
| - spdlog=1.12.0=h5743cc6_0 | |
| - stack_data=0.6.2=pyhd8ed1ab_0 | |
| - tbb=2021.8.0=hdb19cb5_0 | |
| - tk=8.6.13=noxft_h4845f30_101 | |
| - toolz=1.0.0=pyhd8ed1ab_1 | |
| - traitlets=5.14.3=pyhd8ed1ab_0 | |
| - truststore=0.9.2=pyhd8ed1ab_0 | |
| - typing-extensions=4.12.2=hd8ed1ab_0 | |
| - typing_extensions=4.12.2=pyha770c72_0 | |
| - ucc=1.3.0=had72a48_5 | |
| - ucx=1.18.0=hfd9a62f_3 | |
| - urllib3=2.2.3=pyhd8ed1ab_0 | |
| - wcwidth=0.2.13=pyhd8ed1ab_0 | |
| - wheel=0.44.0=pyhd8ed1ab_0 | |
| - xz=5.6.3=hbcc6ac9_1 | |
| - xz-gpl-tools=5.6.3=hbcc6ac9_1 | |
| - xz-tools=5.6.3=hb9d3cd8_1 | |
| - yaml=0.2.5=h7f98852_2 | |
| - yaml-cpp=0.7.0=h59595ed_3 | |
| - zipp=3.20.2=pyhd8ed1ab_0 | |
| - zlib=1.3.1=hb9d3cd8_2 | |
| - zstandard=0.23.0=py311hbc35293_1 | |
| - pip: | |
| - absl-py==2.1.0 | |
| - accelerate==1.3.0 | |
| - aiohappyeyeballs==2.4.6 | |
| - aiohttp==3.11.12 | |
| - aiosignal==1.3.2 | |
| - annotated-types==0.7.0 | |
| - antlr4-python3-runtime==4.9.3 | |
| - anyio==4.8.0 | |
| - apex | |
| - appdirs==1.4.4 | |
| - astunparse==1.6.3 | |
| - biopandas==0.5.1 | |
| - biopython==1.85 | |
| - bioservices==1.12.1 | |
| - biotite==0.41.2 | |
| - biotraj==1.2.2 | |
| - braceexpand==0.1.7 | |
| - cattrs==24.1.3 | |
| - click==8.1.8 | |
| - cloudpathlib==0.20.0 | |
| - colorlog==6.9.0 | |
| - contourpy==1.3.1 | |
| - cpdb-protein==0.2.0 | |
| - cycler==0.12.1 | |
| - cython==3.0.12 | |
| - debugpy==1.8.12 | |
| - deepdiff==8.4.2 | |
| - deepspeed==0.16.3 | |
| - dnspython==2.7.0 | |
| - docker-pycreds==0.4.0 | |
| - docstring-parser==0.16 | |
| - easydev==0.13.3 | |
| - einops==0.8.0 | |
| - expecttest==0.2.1 | |
| - flatbuffers==25.2.10 | |
| - fonttools==4.57.0 | |
| - frozenlist==1.5.0 | |
| - fsspec==2024.10.0 | |
| - gast==0.6.0 | |
| - gemmi==0.7.1 | |
| - gevent==24.11.1 | |
| - gitdb==4.0.12 | |
| - gitpython==3.1.44 | |
| - google-pasta==0.2.0 | |
| - graphein==1.7.7 | |
| - greenlet==3.2.0 | |
| - grequests==0.7.0 | |
| - grpcio==1.70.0 | |
| - h11==0.14.0 | |
| - h5py==3.13.0 | |
| - hjson==3.1.0 | |
| - httpcore==1.0.7 | |
| - httpx==0.28.1 | |
| - huggingface-hub==0.28.0 | |
| - hydra-core==1.3.2 | |
| - hypothesis==6.115.5 | |
| - iopath==0.1.10 | |
| - jaxtyping==0.3.1 | |
| - jiter==0.8.2 | |
| - joblib==1.4.2 | |
| - keras==3.9.2 | |
| - kiwisolver==1.4.8 | |
| - libclang==18.1.1 | |
| - lightning==2.5.0.post0 | |
| - lightning-utilities==0.12.0 | |
| - line-profiler==4.2.0 | |
| - lintrunner==0.12.5 | |
| - lmdb==1.6.2 | |
| - loguru==0.7.3 | |
| - looseversion==1.1.2 | |
| - lxml==5.3.2 | |
| - markdown==3.7 | |
| - markdown-it-py==3.0.0 | |
| - matplotlib==3.10.1 | |
| - mc-bin-client==1.0.1 | |
| - mdurl==0.1.2 | |
| - megatron-core==0.2.0 | |
| - mini3di==0.2.1 | |
| - ml-dtypes==0.5.1 | |
| - mmtf-python==1.1.3 | |
| - mpmath==1.3.0 | |
| - msgpack==1.1.0 | |
| - msgpack-numpy==0.4.8 | |
| - multidict==6.1.0 | |
| - multipledispatch==1.0.0 | |
| - mypy-extensions==1.0.0 | |
| - namex==0.0.8 | |
| - narwhals==1.35.0 | |
| - networkx==3.4.2 | |
| - ninja==1.11.1.1 | |
| - nvidia-cublas-cu12==12.1.3.1 | |
| - nvidia-cuda-cupti-cu12==12.1.105 | |
| - nvidia-cuda-nvrtc-cu12==12.1.105 | |
| - nvidia-cuda-runtime-cu12==12.1.105 | |
| - nvidia-cudnn-cu12==9.1.0.70 | |
| - nvidia-cufft-cu12==11.0.2.54 | |
| - nvidia-curand-cu12==10.3.2.106 | |
| - nvidia-cusolver-cu12==11.4.5.107 | |
| - nvidia-cusparse-cu12==12.1.0.106 | |
| - nvidia-ml-py==12.570.86 | |
| - nvidia-nccl-cu12==2.21.5 | |
| - nvidia-nvjitlink-cu12==12.1.105 | |
| - nvidia-nvtx-cu12==12.1.105 | |
| - omegaconf==2.3.0 | |
| - openai==1.64.0 | |
| - opt-einsum==3.4.0 | |
| - optree==0.13.0 | |
| - orderly-set==5.4.0 | |
| - pandas==2.2.3 | |
| - peft==0.14.0 | |
| - pillow==10.2.0 | |
| - plotly==6.0.1 | |
| - portalocker==3.1.1 | |
| - propcache==0.2.1 | |
| - protobuf==5.29.3 | |
| - py-cpuinfo==9.0.0 | |
| - pybind11==2.14.0.dev1 | |
| - pydantic==2.10.6 | |
| - pydantic-core==2.27.2 | |
| - pyparsing==3.2.1 | |
| - python-dateutil==2.9.0.post0 | |
| - python-etcd==0.4.5 | |
| - pytorch-lightning==2.5.0.post0 | |
| - rdkit==2024.9.6 | |
| - rdkit-pypi==2022.9.5 | |
| - regex==2024.11.6 | |
| - requests-cache==1.2.1 | |
| - rich==14.0.0 | |
| - rich-click==1.8.8 | |
| - safetensors==0.5.2 | |
| - scikit-learn==1.6.1 | |
| - scipy==1.15.1 | |
| - seaborn==0.13.2 | |
| - sentencepiece==0.2.0 | |
| - sentry-sdk==2.20.0 | |
| - setproctitle==1.3.4 | |
| - setuptools==72.1.0 | |
| - smmap==5.0.2 | |
| - sniffio==1.3.1 | |
| - sortedcontainers==2.4.0 | |
| - suds-community==1.2.0 | |
| - sympy==1.13.1 | |
| - tenacity==9.1.2 | |
| - tensorboard==2.19.0 | |
| - tensorboard-data-server==0.7.2 | |
| - tensorflow==2.19.0 | |
| - tensorflow-io-gcs-filesystem==0.37.1 | |
| - termcolor==3.0.1 | |
| - tf-keras==2.19.0 | |
| - threadpoolctl==3.5.0 | |
| - timm==1.0.15 | |
| - tokenizers==0.21.0 | |
| - torch==2.5.1 | |
| - torchaudio==2.5.1 | |
| - torchelastic==0.2.2 | |
| - torchmetrics==1.6.1 | |
| - torchvision==0.20.1 | |
| - tqdm==4.67.1 | |
| - transformers==4.48.1 | |
| - triton==3.1.0 | |
| - typed-argument-parser==1.10.1 | |
| - types-dataclasses==0.6.6 | |
| - typing-inspect==0.9.0 | |
| - tzdata==2025.1 | |
| - url-normalize==2.2.0 | |
| - vplm==0.0.1 | |
| - wadler-lindig==0.1.5 | |
| - wandb==0.19.5 | |
| - webdataset==0.2.111 | |
| - werkzeug==3.1.3 | |
| - wget==3.2 | |
| - wrapt==1.17.2 | |
| - xarray==2025.3.1 | |
| - xmltodict==0.14.2 | |
| - yarl==1.18.3 | |
| - zope-event==5.0 | |
| - zope-interface==7.2 | |
| - zstd==1.5.6.6 | |
| prefix: /opt/conda | |