[build-system]
requires = ["setuptools>=42", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "bioreason"
version = "0.1.0"
description = "Bio-related Reasoning with Language Models"
readme = "README.md"
requires-python = ">=3.11"
classifiers = [
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
]
dependencies = [
    "torch",
    "torchvision",
    "transformers",
    "accelerate",
    "qwen-vl-utils",
    "jupyter",
    "datasets",
    "peft",
    "pytorch_lightning",
    "wandb",
    "trl[vllm]",
    "bitsandbytes",
    "deepspeed",
]

[project.optional-dependencies]
dev = [
    "pytest",
    "black",
    "isort",
    "mypy",
]

[tool.setuptools]
packages = ["bioreason"]

[tool.black]
line-length = 88
target-version = ["py311"]

[tool.isort]
profile = "black"
line_length = 88

[tool.mypy]
python_version = "3.11"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true
disallow_incomplete_defs = true