import os from model.llama_flash_attention import replace_llama_attn_with_flash_attn import torch import argparse import warnings import pytorch_lightning as pl from pytorch_lightning import Trainer, strategies import pytorch_lightning.callbacks as plc from pytorch_lightning.loggers import CSVLogger, WandbLogger from model.protein_chat import ProteinChatPL from data_provider.proteinchat_dm import ProteinChatDM from model.dist_funs import MyDeepSpeedStrategy from pathlib import Path os.environ['OPENBLAS_NUM_THREADS'] = '1' ## for pyg bug warnings.filterwarnings('ignore', category=UserWarning, message='TypedStorage is deprecated') ## for A5000 gpus torch.set_float32_matmul_precision('medium') # can be medium (bfloat16), high (tensorfloat32), highest (float32) def main(args): pl.seed_everything(args.seed) # model if args.init_checkpoint: model = ProteinChatPL.load_from_checkpoint(args.init_checkpoint, strict=False, args=args) print(f"loaded init checkpoint from {args.init_checkpoint}") else: model = ProteinChatPL(args) model.load_weight() print('total params:', sum(p.numel() for p in model.parameters())) # data dm = ProteinChatDM(args.root, args) dm.init_tokenizer(model.tokenizer) callbacks = [] ## fixme save only used parameters callbacks.append(plc.ModelCheckpoint(dirpath="all_checkpoints/"+args.filename+"/", filename='{epoch:02d}', every_n_epochs=args.save_every_n_epochs, save_last=True, save_top_k=-1, save_on_train_epoch_end=True)) if len(args.devices.split(',')) > 1: if args.strategy == 'ddp': strategy = strategies.DDPStrategy(start_method='spawn', find_unused_parameters=True) elif args.strategy == 'deepspeed': strategy = MyDeepSpeedStrategy(stage=2) else: NotImplementedError() else: strategy = None args.devices = eval(args.devices) if args.use_wandb_logger: Path(f'./all_checkpoints/{args.filename}/wandb').mkdir(parents=True, exist_ok=True) logger = WandbLogger(project=args.filename, save_dir=f'./all_checkpoints/{args.filename}/') else: logger = CSVLogger(save_dir=f'./all_checkpoints/{args.filename}/') trainer = Trainer( accelerator=args.accelerator, devices=args.devices, precision=args.precision, accumulate_grad_batches=args.accumulate_grad_batches, max_epochs=args.max_epochs, check_val_every_n_epoch=args.check_val_every_n_epoch, callbacks=callbacks, strategy=strategy, logger=logger, # limit_train_batches=2, # limit_val_batches=2, # limit_test_batches=2, ) if args.mode == 'train': trainer.fit(model, datamodule=dm) elif args.mode == 'eval': trainer.fit_loop.epoch_progress.current.completed = args.caption_eval_epoch - 1 trainer.validate(model, datamodule=dm) else: raise NotImplementedError() def get_args(): parser = argparse.ArgumentParser() parser.add_argument('--filename', type=str, default="llm_tuning") parser.add_argument('--seed', type=int, default=42, help='random seed') # MM settings parser.add_argument('--mode', type=str, default='train') parser.add_argument('--strategy', type=str, default='deepspeed') parser.add_argument('--use_wandb_logger', action='store_true', default=False) ## trainer parser.add_argument('--accelerator', type=str, default='gpu') parser.add_argument('--devices', type=str, default='0,1,2,3') parser.add_argument('--precision', type=str, default='bf16') parser.add_argument('--accumulate_grad_batches', type=int, default=1) parser.add_argument('--max_epochs', type=int, default=10) parser.add_argument('--check_val_every_n_epoch', type=int, default=1) parser.add_argument('--enable_flash', action='store_true', default=False) parser.add_argument('--mix_dataset', action='store_true', default=False) parser = ProteinChatDM.add_model_specific_args(parser) parser = ProteinChatPL.add_model_specific_args(parser) args = parser.parse_args() if args.enable_flash: replace_llama_attn_with_flash_attn() print("=========================================") for k, v in sorted(vars(args).items()): print(k, '=', v) print("=========================================") return args if __name__ == '__main__': main(get_args())