Upload 4 files
Browse files- main.ipynb +1453 -0
- test_image_embeddings.pkl +3 -0
- train_image_embeddings.pkl +3 -0
- train_test_data.zip +3 -0
main.ipynb
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|
| 1 |
+
{
|
| 2 |
+
"cells": [
|
| 3 |
+
{
|
| 4 |
+
"cell_type": "code",
|
| 5 |
+
"execution_count": 1,
|
| 6 |
+
"metadata": {},
|
| 7 |
+
"outputs": [
|
| 8 |
+
{
|
| 9 |
+
"name": "stderr",
|
| 10 |
+
"output_type": "stream",
|
| 11 |
+
"text": [
|
| 12 |
+
"e:\\plant\\venv\\lib\\site-packages\\tqdm\\auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\n",
|
| 13 |
+
" from .autonotebook import tqdm as notebook_tqdm\n"
|
| 14 |
+
]
|
| 15 |
+
}
|
| 16 |
+
],
|
| 17 |
+
"source": [
|
| 18 |
+
"from autogluon.tabular import TabularDataset, TabularPredictor\n",
|
| 19 |
+
"from autogluon.common.utils.utils import setup_outputdir\n",
|
| 20 |
+
"from autogluon.core.utils.loaders import load_pkl\n",
|
| 21 |
+
"from autogluon.core.utils.savers import save_pkl\n",
|
| 22 |
+
"import os.path\n",
|
| 23 |
+
"import os\n",
|
| 24 |
+
"import pandas as pd\n",
|
| 25 |
+
"from PIL import Image\n",
|
| 26 |
+
"import torch\n",
|
| 27 |
+
"from transformers import ViTModel, ViTFeatureExtractor\n",
|
| 28 |
+
"import pickle\n",
|
| 29 |
+
"\n",
|
| 30 |
+
"class MultilabelPredictor:\n",
|
| 31 |
+
" \"\"\" Tabular Predictor for predicting multiple columns in table.\n",
|
| 32 |
+
" Creates multiple TabularPredictor objects which you can also use individually.\n",
|
| 33 |
+
" You can access the TabularPredictor for a particular label via: `multilabel_predictor.get_predictor(label_i)`\n",
|
| 34 |
+
"\n",
|
| 35 |
+
" Parameters\n",
|
| 36 |
+
" ----------\n",
|
| 37 |
+
" labels : List[str]\n",
|
| 38 |
+
" The ith element of this list is the column (i.e. `label`) predicted by the ith TabularPredictor stored in this object.\n",
|
| 39 |
+
" path : str, default = None\n",
|
| 40 |
+
" Path to directory where models and intermediate outputs should be saved.\n",
|
| 41 |
+
" If unspecified, a time-stamped folder called \"AutogluonModels/ag-[TIMESTAMP]\" will be created in the working directory to store all models.\n",
|
| 42 |
+
" Note: To call `fit()` twice and save all results of each fit, you must specify different `path` locations or don't specify `path` at all.\n",
|
| 43 |
+
" Otherwise files from first `fit()` will be overwritten by second `fit()`.\n",
|
| 44 |
+
" Caution: when predicting many labels, this directory may grow large as it needs to store many TabularPredictors.\n",
|
| 45 |
+
" problem_types : List[str], default = None\n",
|
| 46 |
+
" The ith element is the `problem_type` for the ith TabularPredictor stored in this object.\n",
|
| 47 |
+
" eval_metrics : List[str], default = None\n",
|
| 48 |
+
" The ith element is the `eval_metric` for the ith TabularPredictor stored in this object.\n",
|
| 49 |
+
" consider_labels_correlation : bool, default = True\n",
|
| 50 |
+
" Whether the predictions of multiple labels should account for label correlations or predict each label independently of the others.\n",
|
| 51 |
+
" If True, the ordering of `labels` may affect resulting accuracy as each label is predicted conditional on the previous labels appearing earlier in this list (i.e. in an auto-regressive fashion).\n",
|
| 52 |
+
" Set to False if during inference you may want to individually use just the ith TabularPredictor without predicting all the other labels.\n",
|
| 53 |
+
" kwargs :\n",
|
| 54 |
+
" Arguments passed into the initialization of each TabularPredictor.\n",
|
| 55 |
+
"\n",
|
| 56 |
+
" \"\"\"\n",
|
| 57 |
+
"\n",
|
| 58 |
+
" multi_predictor_file = 'multilabel_predictor.pkl'\n",
|
| 59 |
+
"\n",
|
| 60 |
+
" def __init__(self, labels, path=None, problem_types=None, eval_metrics=None, consider_labels_correlation=True, **kwargs):\n",
|
| 61 |
+
" if len(labels) < 2:\n",
|
| 62 |
+
" raise ValueError(\"MultilabelPredictor is only intended for predicting MULTIPLE labels (columns), use TabularPredictor for predicting one label (column).\")\n",
|
| 63 |
+
" if (problem_types is not None) and (len(problem_types) != len(labels)):\n",
|
| 64 |
+
" raise ValueError(\"If provided, `problem_types` must have same length as `labels`\")\n",
|
| 65 |
+
" if (eval_metrics is not None) and (len(eval_metrics) != len(labels)):\n",
|
| 66 |
+
" raise ValueError(\"If provided, `eval_metrics` must have same length as `labels`\")\n",
|
| 67 |
+
" self.path = setup_outputdir(path, warn_if_exist=False)\n",
|
| 68 |
+
" self.labels = labels\n",
|
| 69 |
+
" self.consider_labels_correlation = consider_labels_correlation\n",
|
| 70 |
+
" self.predictors = {} # key = label, value = TabularPredictor or str path to the TabularPredictor for this label\n",
|
| 71 |
+
" if eval_metrics is None:\n",
|
| 72 |
+
" self.eval_metrics = {}\n",
|
| 73 |
+
" else:\n",
|
| 74 |
+
" self.eval_metrics = {labels[i] : eval_metrics[i] for i in range(len(labels))}\n",
|
| 75 |
+
" problem_type = None\n",
|
| 76 |
+
" eval_metric = None\n",
|
| 77 |
+
" for i in range(len(labels)):\n",
|
| 78 |
+
" label = labels[i]\n",
|
| 79 |
+
" path_i = os.path.join(self.path, \"Predictor_\" + str(label))\n",
|
| 80 |
+
" if problem_types is not None:\n",
|
| 81 |
+
" problem_type = problem_types[i]\n",
|
| 82 |
+
" if eval_metrics is not None:\n",
|
| 83 |
+
" eval_metric = eval_metrics[i]\n",
|
| 84 |
+
" self.predictors[label] = TabularPredictor(label=label, problem_type=problem_type, eval_metric=eval_metric, path=path_i, **kwargs)\n",
|
| 85 |
+
"\n",
|
| 86 |
+
" def fit(self, train_data, tuning_data=None, **kwargs):\n",
|
| 87 |
+
" \"\"\" Fits a separate TabularPredictor to predict each of the labels.\n",
|
| 88 |
+
"\n",
|
| 89 |
+
" Parameters\n",
|
| 90 |
+
" ----------\n",
|
| 91 |
+
" train_data, tuning_data : str or autogluon.tabular.TabularDataset or pd.DataFrame\n",
|
| 92 |
+
" See documentation for `TabularPredictor.fit()`.\n",
|
| 93 |
+
" kwargs :\n",
|
| 94 |
+
" Arguments passed into the `fit()` call for each TabularPredictor.\n",
|
| 95 |
+
" \"\"\"\n",
|
| 96 |
+
" if isinstance(train_data, str):\n",
|
| 97 |
+
" train_data = TabularDataset(train_data)\n",
|
| 98 |
+
" if tuning_data is not None and isinstance(tuning_data, str):\n",
|
| 99 |
+
" tuning_data = TabularDataset(tuning_data)\n",
|
| 100 |
+
" train_data_og = train_data.copy()\n",
|
| 101 |
+
" if tuning_data is not None:\n",
|
| 102 |
+
" tuning_data_og = tuning_data.copy()\n",
|
| 103 |
+
" else:\n",
|
| 104 |
+
" tuning_data_og = None\n",
|
| 105 |
+
" save_metrics = len(self.eval_metrics) == 0\n",
|
| 106 |
+
" for i in range(len(self.labels)):\n",
|
| 107 |
+
" label = self.labels[i]\n",
|
| 108 |
+
" predictor = self.get_predictor(label)\n",
|
| 109 |
+
" if not self.consider_labels_correlation:\n",
|
| 110 |
+
" labels_to_drop = [l for l in self.labels if l != label]\n",
|
| 111 |
+
" else:\n",
|
| 112 |
+
" labels_to_drop = [self.labels[j] for j in range(i+1, len(self.labels))]\n",
|
| 113 |
+
" train_data = train_data_og.drop(labels_to_drop, axis=1)\n",
|
| 114 |
+
" if tuning_data is not None:\n",
|
| 115 |
+
" tuning_data = tuning_data_og.drop(labels_to_drop, axis=1)\n",
|
| 116 |
+
" print(f\"Fitting TabularPredictor for label: {label} ...\")\n",
|
| 117 |
+
" predictor.fit(train_data=train_data, tuning_data=tuning_data, **kwargs)\n",
|
| 118 |
+
" self.predictors[label] = predictor.path\n",
|
| 119 |
+
" if save_metrics:\n",
|
| 120 |
+
" self.eval_metrics[label] = predictor.eval_metric\n",
|
| 121 |
+
" self.save()\n",
|
| 122 |
+
"\n",
|
| 123 |
+
" def predict(self, data, **kwargs):\n",
|
| 124 |
+
" \"\"\" Returns DataFrame with label columns containing predictions for each label.\n",
|
| 125 |
+
"\n",
|
| 126 |
+
" Parameters\n",
|
| 127 |
+
" ----------\n",
|
| 128 |
+
" data_copy : str or autogluon.tabular.TabularDataset or pd.DataFrame\n",
|
| 129 |
+
" Data to make predictions for. If label columns are present in this data, they will be ignored. See documentation for `TabularPredictor.predict()`.\n",
|
| 130 |
+
" kwargs :\n",
|
| 131 |
+
" Arguments passed into the predict() call for each TabularPredictor.\n",
|
| 132 |
+
" \"\"\"\n",
|
| 133 |
+
" return self._predict(data, as_proba=False, **kwargs)\n",
|
| 134 |
+
"\n",
|
| 135 |
+
" def predict_proba(self, data, **kwargs):\n",
|
| 136 |
+
" \"\"\" Returns dict where each key is a label and the corresponding value is the `predict_proba()` output for just that label.\n",
|
| 137 |
+
"\n",
|
| 138 |
+
" Parameters\n",
|
| 139 |
+
" ----------\n",
|
| 140 |
+
" data : str or autogluon.tabular.TabularDataset or pd.DataFrame\n",
|
| 141 |
+
" Data to make predictions for. See documentation for `TabularPredictor.predict()` and `TabularPredictor.predict_proba()`.\n",
|
| 142 |
+
" kwargs :\n",
|
| 143 |
+
" Arguments passed into the `predict_proba()` call for each TabularPredictor (also passed into a `predict()` call).\n",
|
| 144 |
+
" \"\"\"\n",
|
| 145 |
+
" return self._predict(data, as_proba=True, **kwargs)\n",
|
| 146 |
+
"\n",
|
| 147 |
+
" def evaluate(self, data, **kwargs):\n",
|
| 148 |
+
" \"\"\" Returns dict where each key is a label and the corresponding value is the `evaluate()` output for just that label.\n",
|
| 149 |
+
"\n",
|
| 150 |
+
" Parameters\n",
|
| 151 |
+
" ----------\n",
|
| 152 |
+
" data : str or autogluon.tabular.TabularDataset or pd.DataFrame\n",
|
| 153 |
+
" Data to evalate predictions of all labels for, must contain all labels as columns. See documentation for `TabularPredictor.evaluate()`.\n",
|
| 154 |
+
" kwargs :\n",
|
| 155 |
+
" Arguments passed into the `evaluate()` call for each TabularPredictor (also passed into the `predict()` call).\n",
|
| 156 |
+
" \"\"\"\n",
|
| 157 |
+
" data = self._get_data(data)\n",
|
| 158 |
+
" eval_dict = {}\n",
|
| 159 |
+
" for label in self.labels:\n",
|
| 160 |
+
" print(f\"Evaluating TabularPredictor for label: {label} ...\")\n",
|
| 161 |
+
" predictor = self.get_predictor(label)\n",
|
| 162 |
+
" eval_dict[label] = predictor.evaluate(data, **kwargs)\n",
|
| 163 |
+
" if self.consider_labels_correlation:\n",
|
| 164 |
+
" data[label] = predictor.predict(data, **kwargs)\n",
|
| 165 |
+
" return eval_dict\n",
|
| 166 |
+
"\n",
|
| 167 |
+
" def save(self):\n",
|
| 168 |
+
" \"\"\" Save MultilabelPredictor to disk. \"\"\"\n",
|
| 169 |
+
" for label in self.labels:\n",
|
| 170 |
+
" if not isinstance(self.predictors[label], str):\n",
|
| 171 |
+
" self.predictors[label] = self.predictors[label].path\n",
|
| 172 |
+
" save_pkl.save(path=os.path.join(self.path, self.multi_predictor_file), object=self)\n",
|
| 173 |
+
" print(f\"MultilabelPredictor saved to disk. Load with: MultilabelPredictor.load('{self.path}')\")\n",
|
| 174 |
+
"\n",
|
| 175 |
+
" @classmethod\n",
|
| 176 |
+
" def load(cls, path):\n",
|
| 177 |
+
" \"\"\" Load MultilabelPredictor from disk `path` previously specified when creating this MultilabelPredictor. \"\"\"\n",
|
| 178 |
+
" path = os.path.expanduser(path)\n",
|
| 179 |
+
" return load_pkl.load(path=os.path.join(path, cls.multi_predictor_file))\n",
|
| 180 |
+
"\n",
|
| 181 |
+
" def get_predictor(self, label):\n",
|
| 182 |
+
" \"\"\" Returns TabularPredictor which is used to predict this label. \"\"\"\n",
|
| 183 |
+
" predictor = self.predictors[label]\n",
|
| 184 |
+
" if isinstance(predictor, str):\n",
|
| 185 |
+
" return TabularPredictor.load(path=predictor)\n",
|
| 186 |
+
" return predictor\n",
|
| 187 |
+
"\n",
|
| 188 |
+
" def _get_data(self, data):\n",
|
| 189 |
+
" if isinstance(data, str):\n",
|
| 190 |
+
" return TabularDataset(data)\n",
|
| 191 |
+
" return data.copy()\n",
|
| 192 |
+
"\n",
|
| 193 |
+
" def _predict(self, data, as_proba=False, **kwargs):\n",
|
| 194 |
+
" data = self._get_data(data)\n",
|
| 195 |
+
" if as_proba:\n",
|
| 196 |
+
" predproba_dict = {}\n",
|
| 197 |
+
" for label in self.labels:\n",
|
| 198 |
+
" print(f\"Predicting with TabularPredictor for label: {label} ...\")\n",
|
| 199 |
+
" predictor = self.get_predictor(label)\n",
|
| 200 |
+
" if as_proba:\n",
|
| 201 |
+
" predproba_dict[label] = predictor.predict_proba(data, as_multiclass=True, **kwargs)\n",
|
| 202 |
+
" data[label] = predictor.predict(data, **kwargs)\n",
|
| 203 |
+
" if not as_proba:\n",
|
| 204 |
+
" return data[self.labels]\n",
|
| 205 |
+
" else:\n",
|
| 206 |
+
" return predproba_dict\n",
|
| 207 |
+
"\n",
|
| 208 |
+
"def extract_image_embeddings_batch(image_paths):\n",
|
| 209 |
+
" \"\"\"Extract embeddings for a batch of images using Vision Transformer.\"\"\"\n",
|
| 210 |
+
" images = []\n",
|
| 211 |
+
" \n",
|
| 212 |
+
" # Load and preprocess all images in the batch\n",
|
| 213 |
+
" for image_path in image_paths:\n",
|
| 214 |
+
" image = Image.open(image_path).convert(\"RGB\")\n",
|
| 215 |
+
" images.append(image)\n",
|
| 216 |
+
" \n",
|
| 217 |
+
" # Prepare inputs as a batch\n",
|
| 218 |
+
" inputs = feature_extractor(images=images, return_tensors=\"pt\", padding=True).to(device)\n",
|
| 219 |
+
" \n",
|
| 220 |
+
" # Get embeddings in a single forward pass\n",
|
| 221 |
+
" with torch.no_grad():\n",
|
| 222 |
+
" outputs = vit_model(**inputs)\n",
|
| 223 |
+
" \n",
|
| 224 |
+
" # Compute mean embeddings for each image in the batch\n",
|
| 225 |
+
" return outputs.last_hidden_state.mean(dim=1).cpu().numpy()\n",
|
| 226 |
+
"\n",
|
| 227 |
+
"def preprocess_images(df, image_dir, image_column='id', batch_size=512):\n",
|
| 228 |
+
" \"\"\"Generate image embeddings for all rows in a DataFrame in batches.\"\"\"\n",
|
| 229 |
+
" embeddings = []\n",
|
| 230 |
+
" n = len(df)\n",
|
| 231 |
+
" \n",
|
| 232 |
+
" for i in range(0, n, batch_size):\n",
|
| 233 |
+
" # Get the current batch of image paths\n",
|
| 234 |
+
" batch = df.iloc[i:i+batch_size]\n",
|
| 235 |
+
" image_paths = [os.path.join(image_dir, f\"{int(row[image_column])}.jpeg\") for _, row in batch.iterrows()]\n",
|
| 236 |
+
" # Extract embeddings for the batch\n",
|
| 237 |
+
" batch_embeddings = extract_image_embeddings_batch(image_paths)\n",
|
| 238 |
+
" embeddings.extend(batch_embeddings)\n",
|
| 239 |
+
" \n",
|
| 240 |
+
" print(f\"Processed batch {i//batch_size + 1}/{(n + batch_size - 1)//batch_size}\")\n",
|
| 241 |
+
" # Convert to DataFrame\n",
|
| 242 |
+
" return pd.DataFrame(embeddings, index=df.index)"
|
| 243 |
+
]
|
| 244 |
+
},
|
| 245 |
+
{
|
| 246 |
+
"cell_type": "code",
|
| 247 |
+
"execution_count": null,
|
| 248 |
+
"metadata": {},
|
| 249 |
+
"outputs": [
|
| 250 |
+
{
|
| 251 |
+
"name": "stdout",
|
| 252 |
+
"output_type": "stream",
|
| 253 |
+
"text": [
|
| 254 |
+
"Extracting image embeddings for training data...\n",
|
| 255 |
+
"Combining ancillary data and image embeddings...\n"
|
| 256 |
+
]
|
| 257 |
+
},
|
| 258 |
+
{
|
| 259 |
+
"name": "stderr",
|
| 260 |
+
"output_type": "stream",
|
| 261 |
+
"text": [
|
| 262 |
+
"Verbosity: 2 (Standard Logging)\n",
|
| 263 |
+
"=================== System Info ===================\n",
|
| 264 |
+
"AutoGluon Version: 1.1.1\n",
|
| 265 |
+
"Python Version: 3.10.11\n",
|
| 266 |
+
"Operating System: Windows\n",
|
| 267 |
+
"Platform Machine: AMD64\n",
|
| 268 |
+
"Platform Version: 10.0.22631\n",
|
| 269 |
+
"CPU Count: 12\n",
|
| 270 |
+
"Memory Avail: 5.11 GB / 15.79 GB (32.4%)\n",
|
| 271 |
+
"Disk Space Avail: 79.69 GB / 150.79 GB (52.8%)\n",
|
| 272 |
+
"===================================================\n",
|
| 273 |
+
"No presets specified! To achieve strong results with AutoGluon, it is recommended to use the available presets.\n",
|
| 274 |
+
"\tRecommended Presets (For more details refer to https://auto.gluon.ai/stable/tutorials/tabular/tabular-essentials.html#presets):\n",
|
| 275 |
+
"\tpresets='best_quality' : Maximize accuracy. Default time_limit=3600.\n",
|
| 276 |
+
"\tpresets='high_quality' : Strong accuracy with fast inference speed. Default time_limit=3600.\n",
|
| 277 |
+
"\tpresets='good_quality' : Good accuracy with very fast inference speed. Default time_limit=3600.\n",
|
| 278 |
+
"\tpresets='medium_quality' : Fast training time, ideal for initial prototyping.\n"
|
| 279 |
+
]
|
| 280 |
+
},
|
| 281 |
+
{
|
| 282 |
+
"name": "stdout",
|
| 283 |
+
"output_type": "stream",
|
| 284 |
+
"text": [
|
| 285 |
+
"Training MultilabelPredictor...\n",
|
| 286 |
+
"Fitting TabularPredictor for label: X4_mean ...\n"
|
| 287 |
+
]
|
| 288 |
+
},
|
| 289 |
+
{
|
| 290 |
+
"name": "stderr",
|
| 291 |
+
"output_type": "stream",
|
| 292 |
+
"text": [
|
| 293 |
+
"Warning: Training may take a very long time because `time_limit` was not specified and `train_data` is large (43363 samples, 190.45 MB).\n",
|
| 294 |
+
"\tConsider setting `time_limit` to ensure training finishes within an expected duration or experiment with a small portion of `train_data` to identify an ideal `presets` and `hyperparameters` configuration.\n",
|
| 295 |
+
"Beginning AutoGluon training ...\n",
|
| 296 |
+
"AutoGluon will save models to \"multilabel_predictor_source\\Predictor_X4_mean\"\n",
|
| 297 |
+
"Train Data Rows: 43363\n",
|
| 298 |
+
"Train Data Columns: 932\n",
|
| 299 |
+
"Label Column: X4_mean\n",
|
| 300 |
+
"Problem Type: regression\n",
|
| 301 |
+
"Preprocessing data ...\n",
|
| 302 |
+
"Using Feature Generators to preprocess the data ...\n",
|
| 303 |
+
"Fitting AutoMLPipelineFeatureGenerator...\n",
|
| 304 |
+
"\tAvailable Memory: 5219.75 MB\n",
|
| 305 |
+
"\tTrain Data (Original) Memory Usage: 181.30 MB (3.5% of available memory)\n",
|
| 306 |
+
"\tInferring data type of each feature based on column values. Set feature_metadata_in to manually specify special dtypes of the features.\n",
|
| 307 |
+
"\tStage 1 Generators:\n",
|
| 308 |
+
"\t\tFitting AsTypeFeatureGenerator...\n",
|
| 309 |
+
"\tStage 2 Generators:\n",
|
| 310 |
+
"\t\tFitting FillNaFeatureGenerator...\n",
|
| 311 |
+
"\tStage 3 Generators:\n",
|
| 312 |
+
"\t\tFitting IdentityFeatureGenerator...\n",
|
| 313 |
+
"\tStage 4 Generators:\n",
|
| 314 |
+
"\t\tFitting DropUniqueFeatureGenerator...\n",
|
| 315 |
+
"\tStage 5 Generators:\n",
|
| 316 |
+
"\t\tFitting DropDuplicatesFeatureGenerator...\n",
|
| 317 |
+
"\tTypes of features in original data (raw dtype, special dtypes):\n",
|
| 318 |
+
"\t\t('float', []) : 810 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 319 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 320 |
+
"\tTypes of features in processed data (raw dtype, special dtypes):\n",
|
| 321 |
+
"\t\t('float', []) : 810 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 322 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 323 |
+
"\t5.1s = Fit runtime\n",
|
| 324 |
+
"\t932 features in original data used to generate 932 features in processed data.\n",
|
| 325 |
+
"\tTrain Data (Processed) Memory Usage: 181.30 MB (3.5% of available memory)\n",
|
| 326 |
+
"Data preprocessing and feature engineering runtime = 5.57s ...\n",
|
| 327 |
+
"AutoGluon will gauge predictive performance using evaluation metric: 'root_mean_squared_error'\n",
|
| 328 |
+
"\tThis metric's sign has been flipped to adhere to being higher_is_better. The metric score can be multiplied by -1 to get the metric value.\n",
|
| 329 |
+
"\tTo change this, specify the eval_metric parameter of Predictor()\n",
|
| 330 |
+
"Automatically generating train/validation split with holdout_frac=0.05765283767267025, Train Rows: 40863, Val Rows: 2500\n",
|
| 331 |
+
"User-specified model hyperparameters to be fit:\n",
|
| 332 |
+
"{\n",
|
| 333 |
+
"\t'NN_TORCH': {},\n",
|
| 334 |
+
"\t'GBM': [{'extra_trees': True, 'ag_args': {'name_suffix': 'XT'}}, {}, 'GBMLarge'],\n",
|
| 335 |
+
"\t'FASTAI': {},\n",
|
| 336 |
+
"\t'RF': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 337 |
+
"\t'XT': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 338 |
+
"\t'KNN': [{'weights': 'uniform', 'ag_args': {'name_suffix': 'Unif'}}, {'weights': 'distance', 'ag_args': {'name_suffix': 'Dist'}}],\n",
|
| 339 |
+
"}\n",
|
| 340 |
+
"Fitting 9 L1 models ...\n",
|
| 341 |
+
"Fitting model: KNeighborsUnif ...\n",
|
| 342 |
+
"\t-0.1421\t = Validation score (-root_mean_squared_error)\n",
|
| 343 |
+
"\t1.47s\t = Training runtime\n",
|
| 344 |
+
"\t2.66s\t = Validation runtime\n",
|
| 345 |
+
"Fitting model: KNeighborsDist ...\n",
|
| 346 |
+
"\t-0.1426\t = Validation score (-root_mean_squared_error)\n",
|
| 347 |
+
"\t1.45s\t = Training runtime\n",
|
| 348 |
+
"\t2.88s\t = Validation runtime\n",
|
| 349 |
+
"Fitting model: LightGBMXT ...\n"
|
| 350 |
+
]
|
| 351 |
+
},
|
| 352 |
+
{
|
| 353 |
+
"name": "stdout",
|
| 354 |
+
"output_type": "stream",
|
| 355 |
+
"text": [
|
| 356 |
+
"[1000]\tvalid_set's rmse: 0.10796\n",
|
| 357 |
+
"[2000]\tvalid_set's rmse: 0.107227\n",
|
| 358 |
+
"[3000]\tvalid_set's rmse: 0.106933\n",
|
| 359 |
+
"[4000]\tvalid_set's rmse: 0.106685\n",
|
| 360 |
+
"[5000]\tvalid_set's rmse: 0.106466\n",
|
| 361 |
+
"[6000]\tvalid_set's rmse: 0.106427\n",
|
| 362 |
+
"[7000]\tvalid_set's rmse: 0.106386\n",
|
| 363 |
+
"[8000]\tvalid_set's rmse: 0.106361\n",
|
| 364 |
+
"[9000]\tvalid_set's rmse: 0.106337\n",
|
| 365 |
+
"[10000]\tvalid_set's rmse: 0.106303\n"
|
| 366 |
+
]
|
| 367 |
+
},
|
| 368 |
+
{
|
| 369 |
+
"name": "stderr",
|
| 370 |
+
"output_type": "stream",
|
| 371 |
+
"text": [
|
| 372 |
+
"\t-0.1063\t = Validation score (-root_mean_squared_error)\n",
|
| 373 |
+
"\t863.4s\t = Training runtime\n",
|
| 374 |
+
"\t0.93s\t = Validation runtime\n",
|
| 375 |
+
"Fitting model: LightGBM ...\n"
|
| 376 |
+
]
|
| 377 |
+
},
|
| 378 |
+
{
|
| 379 |
+
"name": "stdout",
|
| 380 |
+
"output_type": "stream",
|
| 381 |
+
"text": [
|
| 382 |
+
"[1000]\tvalid_set's rmse: 0.108342\n",
|
| 383 |
+
"[2000]\tvalid_set's rmse: 0.107862\n",
|
| 384 |
+
"[3000]\tvalid_set's rmse: 0.107599\n",
|
| 385 |
+
"[4000]\tvalid_set's rmse: 0.107513\n",
|
| 386 |
+
"[5000]\tvalid_set's rmse: 0.107464\n",
|
| 387 |
+
"[6000]\tvalid_set's rmse: 0.107424\n",
|
| 388 |
+
"[7000]\tvalid_set's rmse: 0.107404\n",
|
| 389 |
+
"[8000]\tvalid_set's rmse: 0.107379\n",
|
| 390 |
+
"[9000]\tvalid_set's rmse: 0.107371\n",
|
| 391 |
+
"[10000]\tvalid_set's rmse: 0.107365\n"
|
| 392 |
+
]
|
| 393 |
+
},
|
| 394 |
+
{
|
| 395 |
+
"name": "stderr",
|
| 396 |
+
"output_type": "stream",
|
| 397 |
+
"text": [
|
| 398 |
+
"\t-0.1074\t = Validation score (-root_mean_squared_error)\n",
|
| 399 |
+
"\t1027.06s\t = Training runtime\n",
|
| 400 |
+
"\t0.83s\t = Validation runtime\n",
|
| 401 |
+
"Fitting model: RandomForestMSE ...\n",
|
| 402 |
+
"\t-0.112\t = Validation score (-root_mean_squared_error)\n",
|
| 403 |
+
"\t3077.41s\t = Training runtime\n",
|
| 404 |
+
"\t0.22s\t = Validation runtime\n",
|
| 405 |
+
"Fitting model: ExtraTreesMSE ...\n",
|
| 406 |
+
"\t-0.1119\t = Validation score (-root_mean_squared_error)\n",
|
| 407 |
+
"\t1255.77s\t = Training runtime\n",
|
| 408 |
+
"\t0.24s\t = Validation runtime\n",
|
| 409 |
+
"Fitting model: NeuralNetFastAI ...\n",
|
| 410 |
+
"No improvement since epoch 2: early stopping\n",
|
| 411 |
+
"\t-0.1104\t = Validation score (-root_mean_squared_error)\n",
|
| 412 |
+
"\t135.6s\t = Training runtime\n",
|
| 413 |
+
"\t0.28s\t = Validation runtime\n",
|
| 414 |
+
"Fitting model: NeuralNetTorch ...\n",
|
| 415 |
+
"\t-0.1095\t = Validation score (-root_mean_squared_error)\n",
|
| 416 |
+
"\t143.11s\t = Training runtime\n",
|
| 417 |
+
"\t0.32s\t = Validation runtime\n",
|
| 418 |
+
"Fitting model: LightGBMLarge ...\n"
|
| 419 |
+
]
|
| 420 |
+
},
|
| 421 |
+
{
|
| 422 |
+
"name": "stdout",
|
| 423 |
+
"output_type": "stream",
|
| 424 |
+
"text": [
|
| 425 |
+
"[1000]\tvalid_set's rmse: 0.107068\n",
|
| 426 |
+
"[2000]\tvalid_set's rmse: 0.10661\n",
|
| 427 |
+
"[3000]\tvalid_set's rmse: 0.10653\n",
|
| 428 |
+
"[4000]\tvalid_set's rmse: 0.106503\n",
|
| 429 |
+
"[5000]\tvalid_set's rmse: 0.106497\n",
|
| 430 |
+
"[6000]\tvalid_set's rmse: 0.106495\n",
|
| 431 |
+
"[7000]\tvalid_set's rmse: 0.106495\n",
|
| 432 |
+
"[8000]\tvalid_set's rmse: 0.106495\n",
|
| 433 |
+
"[9000]\tvalid_set's rmse: 0.106495\n",
|
| 434 |
+
"[10000]\tvalid_set's rmse: 0.106495\n"
|
| 435 |
+
]
|
| 436 |
+
},
|
| 437 |
+
{
|
| 438 |
+
"name": "stderr",
|
| 439 |
+
"output_type": "stream",
|
| 440 |
+
"text": [
|
| 441 |
+
"\t-0.1065\t = Validation score (-root_mean_squared_error)\n",
|
| 442 |
+
"\t2938.26s\t = Training runtime\n",
|
| 443 |
+
"\t1.38s\t = Validation runtime\n",
|
| 444 |
+
"Fitting model: WeightedEnsemble_L2 ...\n",
|
| 445 |
+
"\tEnsemble Weights: {'LightGBMXT': 0.333, 'NeuralNetTorch': 0.238, 'LightGBMLarge': 0.238, 'NeuralNetFastAI': 0.095, 'KNeighborsDist': 0.048, 'LightGBM': 0.048}\n",
|
| 446 |
+
"\t-0.1047\t = Validation score (-root_mean_squared_error)\n",
|
| 447 |
+
"\t0.03s\t = Training runtime\n",
|
| 448 |
+
"\t0.0s\t = Validation runtime\n",
|
| 449 |
+
"AutoGluon training complete, total runtime = 9466.82s ... Best model: WeightedEnsemble_L2 | Estimated inference throughput: 378.7 rows/s (2500 batch size)\n",
|
| 450 |
+
"TabularPredictor saved. To load, use: predictor = TabularPredictor.load(\"multilabel_predictor_source\\Predictor_X4_mean\")\n",
|
| 451 |
+
"Verbosity: 2 (Standard Logging)\n",
|
| 452 |
+
"=================== System Info ===================\n",
|
| 453 |
+
"AutoGluon Version: 1.1.1\n",
|
| 454 |
+
"Python Version: 3.10.11\n",
|
| 455 |
+
"Operating System: Windows\n",
|
| 456 |
+
"Platform Machine: AMD64\n",
|
| 457 |
+
"Platform Version: 10.0.22631\n",
|
| 458 |
+
"CPU Count: 12\n",
|
| 459 |
+
"Memory Avail: 5.24 GB / 15.79 GB (33.2%)\n",
|
| 460 |
+
"Disk Space Avail: 77.84 GB / 150.79 GB (51.6%)\n",
|
| 461 |
+
"===================================================\n",
|
| 462 |
+
"No presets specified! To achieve strong results with AutoGluon, it is recommended to use the available presets.\n",
|
| 463 |
+
"\tRecommended Presets (For more details refer to https://auto.gluon.ai/stable/tutorials/tabular/tabular-essentials.html#presets):\n",
|
| 464 |
+
"\tpresets='best_quality' : Maximize accuracy. Default time_limit=3600.\n",
|
| 465 |
+
"\tpresets='high_quality' : Strong accuracy with fast inference speed. Default time_limit=3600.\n",
|
| 466 |
+
"\tpresets='good_quality' : Good accuracy with very fast inference speed. Default time_limit=3600.\n",
|
| 467 |
+
"\tpresets='medium_quality' : Fast training time, ideal for initial prototyping.\n",
|
| 468 |
+
"Warning: Training may take a very long time because `time_limit` was not specified and `train_data` is large (43363 samples, 190.8 MB).\n",
|
| 469 |
+
"\tConsider setting `time_limit` to ensure training finishes within an expected duration or experiment with a small portion of `train_data` to identify an ideal `presets` and `hyperparameters` configuration.\n",
|
| 470 |
+
"Beginning AutoGluon training ...\n",
|
| 471 |
+
"AutoGluon will save models to \"multilabel_predictor_source\\Predictor_X11_mean\"\n",
|
| 472 |
+
"Train Data Rows: 43363\n",
|
| 473 |
+
"Train Data Columns: 933\n",
|
| 474 |
+
"Label Column: X11_mean\n",
|
| 475 |
+
"Problem Type: regression\n",
|
| 476 |
+
"Preprocessing data ...\n",
|
| 477 |
+
"Using Feature Generators to preprocess the data ...\n"
|
| 478 |
+
]
|
| 479 |
+
},
|
| 480 |
+
{
|
| 481 |
+
"name": "stdout",
|
| 482 |
+
"output_type": "stream",
|
| 483 |
+
"text": [
|
| 484 |
+
"Fitting TabularPredictor for label: X11_mean ...\n"
|
| 485 |
+
]
|
| 486 |
+
},
|
| 487 |
+
{
|
| 488 |
+
"name": "stderr",
|
| 489 |
+
"output_type": "stream",
|
| 490 |
+
"text": [
|
| 491 |
+
"Fitting AutoMLPipelineFeatureGenerator...\n",
|
| 492 |
+
"\tAvailable Memory: 5340.17 MB\n",
|
| 493 |
+
"\tTrain Data (Original) Memory Usage: 181.63 MB (3.4% of available memory)\n",
|
| 494 |
+
"\tInferring data type of each feature based on column values. Set feature_metadata_in to manually specify special dtypes of the features.\n",
|
| 495 |
+
"\tStage 1 Generators:\n",
|
| 496 |
+
"\t\tFitting AsTypeFeatureGenerator...\n",
|
| 497 |
+
"\tStage 2 Generators:\n",
|
| 498 |
+
"\t\tFitting FillNaFeatureGenerator...\n",
|
| 499 |
+
"\tStage 3 Generators:\n",
|
| 500 |
+
"\t\tFitting IdentityFeatureGenerator...\n",
|
| 501 |
+
"\tStage 4 Generators:\n",
|
| 502 |
+
"\t\tFitting DropUniqueFeatureGenerator...\n",
|
| 503 |
+
"\tStage 5 Generators:\n",
|
| 504 |
+
"\t\tFitting DropDuplicatesFeatureGenerator...\n",
|
| 505 |
+
"\tTypes of features in original data (raw dtype, special dtypes):\n",
|
| 506 |
+
"\t\t('float', []) : 811 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 507 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 508 |
+
"\tTypes of features in processed data (raw dtype, special dtypes):\n",
|
| 509 |
+
"\t\t('float', []) : 811 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 510 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 511 |
+
"\t5.5s = Fit runtime\n",
|
| 512 |
+
"\t933 features in original data used to generate 933 features in processed data.\n",
|
| 513 |
+
"\tTrain Data (Processed) Memory Usage: 181.63 MB (3.4% of available memory)\n",
|
| 514 |
+
"Data preprocessing and feature engineering runtime = 5.89s ...\n",
|
| 515 |
+
"AutoGluon will gauge predictive performance using evaluation metric: 'root_mean_squared_error'\n",
|
| 516 |
+
"\tThis metric's sign has been flipped to adhere to being higher_is_better. The metric score can be multiplied by -1 to get the metric value.\n",
|
| 517 |
+
"\tTo change this, specify the eval_metric parameter of Predictor()\n",
|
| 518 |
+
"Automatically generating train/validation split with holdout_frac=0.05765283767267025, Train Rows: 40863, Val Rows: 2500\n",
|
| 519 |
+
"User-specified model hyperparameters to be fit:\n",
|
| 520 |
+
"{\n",
|
| 521 |
+
"\t'NN_TORCH': {},\n",
|
| 522 |
+
"\t'GBM': [{'extra_trees': True, 'ag_args': {'name_suffix': 'XT'}}, {}, 'GBMLarge'],\n",
|
| 523 |
+
"\t'FASTAI': {},\n",
|
| 524 |
+
"\t'RF': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 525 |
+
"\t'XT': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 526 |
+
"\t'KNN': [{'weights': 'uniform', 'ag_args': {'name_suffix': 'Unif'}}, {'weights': 'distance', 'ag_args': {'name_suffix': 'Dist'}}],\n",
|
| 527 |
+
"}\n",
|
| 528 |
+
"Fitting 9 L1 models ...\n",
|
| 529 |
+
"Fitting model: KNeighborsUnif ...\n",
|
| 530 |
+
"\t-7.1893\t = Validation score (-root_mean_squared_error)\n",
|
| 531 |
+
"\t1.57s\t = Training runtime\n",
|
| 532 |
+
"\t2.38s\t = Validation runtime\n",
|
| 533 |
+
"Fitting model: KNeighborsDist ...\n",
|
| 534 |
+
"\t-7.2766\t = Validation score (-root_mean_squared_error)\n",
|
| 535 |
+
"\t1.58s\t = Training runtime\n",
|
| 536 |
+
"\t2.41s\t = Validation runtime\n",
|
| 537 |
+
"Fitting model: LightGBMXT ...\n"
|
| 538 |
+
]
|
| 539 |
+
},
|
| 540 |
+
{
|
| 541 |
+
"name": "stdout",
|
| 542 |
+
"output_type": "stream",
|
| 543 |
+
"text": [
|
| 544 |
+
"[1000]\tvalid_set's rmse: 5.34109\n",
|
| 545 |
+
"[2000]\tvalid_set's rmse: 5.3167\n",
|
| 546 |
+
"[3000]\tvalid_set's rmse: 5.29916\n",
|
| 547 |
+
"[4000]\tvalid_set's rmse: 5.29677\n",
|
| 548 |
+
"[5000]\tvalid_set's rmse: 5.29458\n",
|
| 549 |
+
"[6000]\tvalid_set's rmse: 5.29489\n",
|
| 550 |
+
"[7000]\tvalid_set's rmse: 5.29236\n",
|
| 551 |
+
"[8000]\tvalid_set's rmse: 5.29263\n",
|
| 552 |
+
"[9000]\tvalid_set's rmse: 5.29315\n"
|
| 553 |
+
]
|
| 554 |
+
},
|
| 555 |
+
{
|
| 556 |
+
"name": "stderr",
|
| 557 |
+
"output_type": "stream",
|
| 558 |
+
"text": [
|
| 559 |
+
"\t-5.2913\t = Validation score (-root_mean_squared_error)\n",
|
| 560 |
+
"\t831.77s\t = Training runtime\n",
|
| 561 |
+
"\t0.34s\t = Validation runtime\n",
|
| 562 |
+
"Fitting model: LightGBM ...\n"
|
| 563 |
+
]
|
| 564 |
+
},
|
| 565 |
+
{
|
| 566 |
+
"name": "stdout",
|
| 567 |
+
"output_type": "stream",
|
| 568 |
+
"text": [
|
| 569 |
+
"[1000]\tvalid_set's rmse: 5.29744\n",
|
| 570 |
+
"[2000]\tvalid_set's rmse: 5.26782\n",
|
| 571 |
+
"[3000]\tvalid_set's rmse: 5.26091\n",
|
| 572 |
+
"[4000]\tvalid_set's rmse: 5.25295\n",
|
| 573 |
+
"[5000]\tvalid_set's rmse: 5.24923\n",
|
| 574 |
+
"[6000]\tvalid_set's rmse: 5.24709\n",
|
| 575 |
+
"[7000]\tvalid_set's rmse: 5.24592\n",
|
| 576 |
+
"[8000]\tvalid_set's rmse: 5.24511\n",
|
| 577 |
+
"[9000]\tvalid_set's rmse: 5.24443\n",
|
| 578 |
+
"[10000]\tvalid_set's rmse: 5.24422\n"
|
| 579 |
+
]
|
| 580 |
+
},
|
| 581 |
+
{
|
| 582 |
+
"name": "stderr",
|
| 583 |
+
"output_type": "stream",
|
| 584 |
+
"text": [
|
| 585 |
+
"\t-5.2442\t = Validation score (-root_mean_squared_error)\n",
|
| 586 |
+
"\t1007.46s\t = Training runtime\n",
|
| 587 |
+
"\t0.8s\t = Validation runtime\n",
|
| 588 |
+
"Fitting model: RandomForestMSE ...\n",
|
| 589 |
+
"\t-5.466\t = Validation score (-root_mean_squared_error)\n",
|
| 590 |
+
"\t3405.54s\t = Training runtime\n",
|
| 591 |
+
"\t0.21s\t = Validation runtime\n",
|
| 592 |
+
"Fitting model: ExtraTreesMSE ...\n",
|
| 593 |
+
"\t-5.5053\t = Validation score (-root_mean_squared_error)\n",
|
| 594 |
+
"\t1100.81s\t = Training runtime\n",
|
| 595 |
+
"\t0.19s\t = Validation runtime\n",
|
| 596 |
+
"Fitting model: NeuralNetFastAI ...\n",
|
| 597 |
+
"No improvement since epoch 8: early stopping\n",
|
| 598 |
+
"\t-5.3575\t = Validation score (-root_mean_squared_error)\n",
|
| 599 |
+
"\t156.5s\t = Training runtime\n",
|
| 600 |
+
"\t0.26s\t = Validation runtime\n",
|
| 601 |
+
"Fitting model: NeuralNetTorch ...\n",
|
| 602 |
+
"\t-5.3648\t = Validation score (-root_mean_squared_error)\n",
|
| 603 |
+
"\t123.3s\t = Training runtime\n",
|
| 604 |
+
"\t0.3s\t = Validation runtime\n",
|
| 605 |
+
"Fitting model: LightGBMLarge ...\n"
|
| 606 |
+
]
|
| 607 |
+
},
|
| 608 |
+
{
|
| 609 |
+
"name": "stdout",
|
| 610 |
+
"output_type": "stream",
|
| 611 |
+
"text": [
|
| 612 |
+
"[1000]\tvalid_set's rmse: 5.22467\n",
|
| 613 |
+
"[2000]\tvalid_set's rmse: 5.20862\n",
|
| 614 |
+
"[3000]\tvalid_set's rmse: 5.20477\n",
|
| 615 |
+
"[4000]\tvalid_set's rmse: 5.20326\n",
|
| 616 |
+
"[5000]\tvalid_set's rmse: 5.20295\n",
|
| 617 |
+
"[6000]\tvalid_set's rmse: 5.20281\n",
|
| 618 |
+
"[7000]\tvalid_set's rmse: 5.20276\n",
|
| 619 |
+
"[8000]\tvalid_set's rmse: 5.20275\n",
|
| 620 |
+
"[9000]\tvalid_set's rmse: 5.20275\n",
|
| 621 |
+
"[10000]\tvalid_set's rmse: 5.20275\n"
|
| 622 |
+
]
|
| 623 |
+
},
|
| 624 |
+
{
|
| 625 |
+
"name": "stderr",
|
| 626 |
+
"output_type": "stream",
|
| 627 |
+
"text": [
|
| 628 |
+
"\t-5.2028\t = Validation score (-root_mean_squared_error)\n",
|
| 629 |
+
"\t2423.97s\t = Training runtime\n",
|
| 630 |
+
"\t1.28s\t = Validation runtime\n",
|
| 631 |
+
"Fitting model: WeightedEnsemble_L2 ...\n",
|
| 632 |
+
"\tEnsemble Weights: {'LightGBMLarge': 0.417, 'NeuralNetFastAI': 0.375, 'LightGBM': 0.208}\n",
|
| 633 |
+
"\t-5.0914\t = Validation score (-root_mean_squared_error)\n",
|
| 634 |
+
"\t0.02s\t = Training runtime\n",
|
| 635 |
+
"\t0.0s\t = Validation runtime\n",
|
| 636 |
+
"AutoGluon training complete, total runtime = 9074.56s ... Best model: WeightedEnsemble_L2 | Estimated inference throughput: 1068.5 rows/s (2500 batch size)\n",
|
| 637 |
+
"TabularPredictor saved. To load, use: predictor = TabularPredictor.load(\"multilabel_predictor_source\\Predictor_X11_mean\")\n",
|
| 638 |
+
"Verbosity: 2 (Standard Logging)\n",
|
| 639 |
+
"=================== System Info ===================\n",
|
| 640 |
+
"AutoGluon Version: 1.1.1\n",
|
| 641 |
+
"Python Version: 3.10.11\n",
|
| 642 |
+
"Operating System: Windows\n",
|
| 643 |
+
"Platform Machine: AMD64\n",
|
| 644 |
+
"Platform Version: 10.0.22631\n",
|
| 645 |
+
"CPU Count: 12\n",
|
| 646 |
+
"Memory Avail: 7.64 GB / 15.79 GB (48.4%)\n",
|
| 647 |
+
"Disk Space Avail: 75.99 GB / 150.79 GB (50.4%)\n",
|
| 648 |
+
"===================================================\n",
|
| 649 |
+
"No presets specified! To achieve strong results with AutoGluon, it is recommended to use the available presets.\n",
|
| 650 |
+
"\tRecommended Presets (For more details refer to https://auto.gluon.ai/stable/tutorials/tabular/tabular-essentials.html#presets):\n",
|
| 651 |
+
"\tpresets='best_quality' : Maximize accuracy. Default time_limit=3600.\n",
|
| 652 |
+
"\tpresets='high_quality' : Strong accuracy with fast inference speed. Default time_limit=3600.\n",
|
| 653 |
+
"\tpresets='good_quality' : Good accuracy with very fast inference speed. Default time_limit=3600.\n",
|
| 654 |
+
"\tpresets='medium_quality' : Fast training time, ideal for initial prototyping.\n",
|
| 655 |
+
"Warning: Training may take a very long time because `time_limit` was not specified and `train_data` is large (43363 samples, 191.14 MB).\n",
|
| 656 |
+
"\tConsider setting `time_limit` to ensure training finishes within an expected duration or experiment with a small portion of `train_data` to identify an ideal `presets` and `hyperparameters` configuration.\n",
|
| 657 |
+
"Beginning AutoGluon training ...\n",
|
| 658 |
+
"AutoGluon will save models to \"multilabel_predictor_source\\Predictor_X18_mean\"\n",
|
| 659 |
+
"Train Data Rows: 43363\n",
|
| 660 |
+
"Train Data Columns: 934\n",
|
| 661 |
+
"Label Column: X18_mean\n",
|
| 662 |
+
"Problem Type: regression\n",
|
| 663 |
+
"Preprocessing data ...\n"
|
| 664 |
+
]
|
| 665 |
+
},
|
| 666 |
+
{
|
| 667 |
+
"name": "stdout",
|
| 668 |
+
"output_type": "stream",
|
| 669 |
+
"text": [
|
| 670 |
+
"Fitting TabularPredictor for label: X18_mean ...\n"
|
| 671 |
+
]
|
| 672 |
+
},
|
| 673 |
+
{
|
| 674 |
+
"name": "stderr",
|
| 675 |
+
"output_type": "stream",
|
| 676 |
+
"text": [
|
| 677 |
+
"Using Feature Generators to preprocess the data ...\n",
|
| 678 |
+
"Fitting AutoMLPipelineFeatureGenerator...\n",
|
| 679 |
+
"\tAvailable Memory: 7901.67 MB\n",
|
| 680 |
+
"\tTrain Data (Original) Memory Usage: 181.96 MB (2.3% of available memory)\n",
|
| 681 |
+
"\tInferring data type of each feature based on column values. Set feature_metadata_in to manually specify special dtypes of the features.\n",
|
| 682 |
+
"\tStage 1 Generators:\n",
|
| 683 |
+
"\t\tFitting AsTypeFeatureGenerator...\n",
|
| 684 |
+
"\tStage 2 Generators:\n",
|
| 685 |
+
"\t\tFitting FillNaFeatureGenerator...\n",
|
| 686 |
+
"\tStage 3 Generators:\n",
|
| 687 |
+
"\t\tFitting IdentityFeatureGenerator...\n",
|
| 688 |
+
"\tStage 4 Generators:\n",
|
| 689 |
+
"\t\tFitting DropUniqueFeatureGenerator...\n",
|
| 690 |
+
"\tStage 5 Generators:\n",
|
| 691 |
+
"\t\tFitting DropDuplicatesFeatureGenerator...\n",
|
| 692 |
+
"\tTypes of features in original data (raw dtype, special dtypes):\n",
|
| 693 |
+
"\t\t('float', []) : 812 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 694 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 695 |
+
"\tTypes of features in processed data (raw dtype, special dtypes):\n",
|
| 696 |
+
"\t\t('float', []) : 812 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 697 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 698 |
+
"\t4.8s = Fit runtime\n",
|
| 699 |
+
"\t934 features in original data used to generate 934 features in processed data.\n",
|
| 700 |
+
"\tTrain Data (Processed) Memory Usage: 181.96 MB (2.3% of available memory)\n",
|
| 701 |
+
"Data preprocessing and feature engineering runtime = 5.04s ...\n",
|
| 702 |
+
"AutoGluon will gauge predictive performance using evaluation metric: 'root_mean_squared_error'\n",
|
| 703 |
+
"\tThis metric's sign has been flipped to adhere to being higher_is_better. The metric score can be multiplied by -1 to get the metric value.\n",
|
| 704 |
+
"\tTo change this, specify the eval_metric parameter of Predictor()\n",
|
| 705 |
+
"Automatically generating train/validation split with holdout_frac=0.05765283767267025, Train Rows: 40863, Val Rows: 2500\n",
|
| 706 |
+
"User-specified model hyperparameters to be fit:\n",
|
| 707 |
+
"{\n",
|
| 708 |
+
"\t'NN_TORCH': {},\n",
|
| 709 |
+
"\t'GBM': [{'extra_trees': True, 'ag_args': {'name_suffix': 'XT'}}, {}, 'GBMLarge'],\n",
|
| 710 |
+
"\t'FASTAI': {},\n",
|
| 711 |
+
"\t'RF': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 712 |
+
"\t'XT': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 713 |
+
"\t'KNN': [{'weights': 'uniform', 'ag_args': {'name_suffix': 'Unif'}}, {'weights': 'distance', 'ag_args': {'name_suffix': 'Dist'}}],\n",
|
| 714 |
+
"}\n",
|
| 715 |
+
"Fitting 9 L1 models ...\n",
|
| 716 |
+
"Fitting model: KNeighborsUnif ...\n",
|
| 717 |
+
"\t-4.4719\t = Validation score (-root_mean_squared_error)\n",
|
| 718 |
+
"\t1.33s\t = Training runtime\n",
|
| 719 |
+
"\t2.34s\t = Validation runtime\n",
|
| 720 |
+
"Fitting model: KNeighborsDist ...\n",
|
| 721 |
+
"\t-4.4852\t = Validation score (-root_mean_squared_error)\n",
|
| 722 |
+
"\t1.35s\t = Training runtime\n",
|
| 723 |
+
"\t2.87s\t = Validation runtime\n",
|
| 724 |
+
"Fitting model: LightGBMXT ...\n"
|
| 725 |
+
]
|
| 726 |
+
},
|
| 727 |
+
{
|
| 728 |
+
"name": "stdout",
|
| 729 |
+
"output_type": "stream",
|
| 730 |
+
"text": [
|
| 731 |
+
"[1000]\tvalid_set's rmse: 2.7975\n",
|
| 732 |
+
"[2000]\tvalid_set's rmse: 2.77084\n",
|
| 733 |
+
"[3000]\tvalid_set's rmse: 2.76197\n",
|
| 734 |
+
"[4000]\tvalid_set's rmse: 2.76049\n",
|
| 735 |
+
"[5000]\tvalid_set's rmse: 2.75914\n",
|
| 736 |
+
"[6000]\tvalid_set's rmse: 2.75773\n",
|
| 737 |
+
"[7000]\tvalid_set's rmse: 2.75728\n",
|
| 738 |
+
"[8000]\tvalid_set's rmse: 2.75624\n",
|
| 739 |
+
"[9000]\tvalid_set's rmse: 2.75584\n",
|
| 740 |
+
"[10000]\tvalid_set's rmse: 2.75552\n"
|
| 741 |
+
]
|
| 742 |
+
},
|
| 743 |
+
{
|
| 744 |
+
"name": "stderr",
|
| 745 |
+
"output_type": "stream",
|
| 746 |
+
"text": [
|
| 747 |
+
"\t-2.7555\t = Validation score (-root_mean_squared_error)\n",
|
| 748 |
+
"\t722.76s\t = Training runtime\n",
|
| 749 |
+
"\t0.62s\t = Validation runtime\n",
|
| 750 |
+
"Fitting model: LightGBM ...\n"
|
| 751 |
+
]
|
| 752 |
+
},
|
| 753 |
+
{
|
| 754 |
+
"name": "stdout",
|
| 755 |
+
"output_type": "stream",
|
| 756 |
+
"text": [
|
| 757 |
+
"[1000]\tvalid_set's rmse: 2.79461\n",
|
| 758 |
+
"[2000]\tvalid_set's rmse: 2.77581\n",
|
| 759 |
+
"[3000]\tvalid_set's rmse: 2.76911\n",
|
| 760 |
+
"[4000]\tvalid_set's rmse: 2.76665\n",
|
| 761 |
+
"[5000]\tvalid_set's rmse: 2.76656\n"
|
| 762 |
+
]
|
| 763 |
+
},
|
| 764 |
+
{
|
| 765 |
+
"name": "stderr",
|
| 766 |
+
"output_type": "stream",
|
| 767 |
+
"text": [
|
| 768 |
+
"\t-2.7665\t = Validation score (-root_mean_squared_error)\n",
|
| 769 |
+
"\t455.92s\t = Training runtime\n",
|
| 770 |
+
"\t0.25s\t = Validation runtime\n",
|
| 771 |
+
"Fitting model: RandomForestMSE ...\n",
|
| 772 |
+
"\t-3.0041\t = Validation score (-root_mean_squared_error)\n",
|
| 773 |
+
"\t5707.16s\t = Training runtime\n",
|
| 774 |
+
"\t0.29s\t = Validation runtime\n",
|
| 775 |
+
"Fitting model: ExtraTreesMSE ...\n",
|
| 776 |
+
"\t-3.0281\t = Validation score (-root_mean_squared_error)\n",
|
| 777 |
+
"\t1414.74s\t = Training runtime\n",
|
| 778 |
+
"\t0.24s\t = Validation runtime\n",
|
| 779 |
+
"Fitting model: NeuralNetFastAI ...\n",
|
| 780 |
+
"\t-2.7646\t = Validation score (-root_mean_squared_error)\n",
|
| 781 |
+
"\t158.74s\t = Training runtime\n",
|
| 782 |
+
"\t0.24s\t = Validation runtime\n",
|
| 783 |
+
"Fitting model: NeuralNetTorch ...\n",
|
| 784 |
+
"\t-2.7368\t = Validation score (-root_mean_squared_error)\n",
|
| 785 |
+
"\t132.61s\t = Training runtime\n",
|
| 786 |
+
"\t0.27s\t = Validation runtime\n",
|
| 787 |
+
"Fitting model: LightGBMLarge ...\n"
|
| 788 |
+
]
|
| 789 |
+
},
|
| 790 |
+
{
|
| 791 |
+
"name": "stdout",
|
| 792 |
+
"output_type": "stream",
|
| 793 |
+
"text": [
|
| 794 |
+
"[1000]\tvalid_set's rmse: 2.76306\n",
|
| 795 |
+
"[2000]\tvalid_set's rmse: 2.75877\n",
|
| 796 |
+
"[3000]\tvalid_set's rmse: 2.75837\n",
|
| 797 |
+
"[4000]\tvalid_set's rmse: 2.75822\n",
|
| 798 |
+
"[5000]\tvalid_set's rmse: 2.75819\n",
|
| 799 |
+
"[6000]\tvalid_set's rmse: 2.75819\n",
|
| 800 |
+
"[7000]\tvalid_set's rmse: 2.75818\n",
|
| 801 |
+
"[8000]\tvalid_set's rmse: 2.75818\n",
|
| 802 |
+
"[9000]\tvalid_set's rmse: 2.75818\n",
|
| 803 |
+
"[10000]\tvalid_set's rmse: 2.75818\n"
|
| 804 |
+
]
|
| 805 |
+
},
|
| 806 |
+
{
|
| 807 |
+
"name": "stderr",
|
| 808 |
+
"output_type": "stream",
|
| 809 |
+
"text": [
|
| 810 |
+
"\t-2.7582\t = Validation score (-root_mean_squared_error)\n",
|
| 811 |
+
"\t2648.19s\t = Training runtime\n",
|
| 812 |
+
"\t1.43s\t = Validation runtime\n",
|
| 813 |
+
"Fitting model: WeightedEnsemble_L2 ...\n",
|
| 814 |
+
"\tEnsemble Weights: {'NeuralNetTorch': 0.375, 'NeuralNetFastAI': 0.333, 'LightGBMLarge': 0.167, 'LightGBM': 0.125}\n",
|
| 815 |
+
"\t-2.6075\t = Validation score (-root_mean_squared_error)\n",
|
| 816 |
+
"\t0.03s\t = Training runtime\n",
|
| 817 |
+
"\t0.0s\t = Validation runtime\n",
|
| 818 |
+
"AutoGluon training complete, total runtime = 11264.22s ... Best model: WeightedEnsemble_L2 | Estimated inference throughput: 1140.4 rows/s (2500 batch size)\n",
|
| 819 |
+
"TabularPredictor saved. To load, use: predictor = TabularPredictor.load(\"multilabel_predictor_source\\Predictor_X18_mean\")\n",
|
| 820 |
+
"Verbosity: 2 (Standard Logging)\n",
|
| 821 |
+
"=================== System Info ===================\n",
|
| 822 |
+
"AutoGluon Version: 1.1.1\n",
|
| 823 |
+
"Python Version: 3.10.11\n",
|
| 824 |
+
"Operating System: Windows\n",
|
| 825 |
+
"Platform Machine: AMD64\n",
|
| 826 |
+
"Platform Version: 10.0.22631\n",
|
| 827 |
+
"CPU Count: 12\n",
|
| 828 |
+
"Memory Avail: 7.60 GB / 15.79 GB (48.1%)\n",
|
| 829 |
+
"Disk Space Avail: 74.16 GB / 150.79 GB (49.2%)\n",
|
| 830 |
+
"===================================================\n",
|
| 831 |
+
"No presets specified! To achieve strong results with AutoGluon, it is recommended to use the available presets.\n",
|
| 832 |
+
"\tRecommended Presets (For more details refer to https://auto.gluon.ai/stable/tutorials/tabular/tabular-essentials.html#presets):\n",
|
| 833 |
+
"\tpresets='best_quality' : Maximize accuracy. Default time_limit=3600.\n",
|
| 834 |
+
"\tpresets='high_quality' : Strong accuracy with fast inference speed. Default time_limit=3600.\n",
|
| 835 |
+
"\tpresets='good_quality' : Good accuracy with very fast inference speed. Default time_limit=3600.\n",
|
| 836 |
+
"\tpresets='medium_quality' : Fast training time, ideal for initial prototyping.\n",
|
| 837 |
+
"Warning: Training may take a very long time because `time_limit` was not specified and `train_data` is large (43363 samples, 191.49 MB).\n",
|
| 838 |
+
"\tConsider setting `time_limit` to ensure training finishes within an expected duration or experiment with a small portion of `train_data` to identify an ideal `presets` and `hyperparameters` configuration.\n",
|
| 839 |
+
"Beginning AutoGluon training ...\n",
|
| 840 |
+
"AutoGluon will save models to \"multilabel_predictor_source\\Predictor_X26_mean\"\n",
|
| 841 |
+
"Train Data Rows: 43363\n",
|
| 842 |
+
"Train Data Columns: 935\n",
|
| 843 |
+
"Label Column: X26_mean\n",
|
| 844 |
+
"Problem Type: regression\n",
|
| 845 |
+
"Preprocessing data ...\n",
|
| 846 |
+
"Using Feature Generators to preprocess the data ...\n"
|
| 847 |
+
]
|
| 848 |
+
},
|
| 849 |
+
{
|
| 850 |
+
"name": "stdout",
|
| 851 |
+
"output_type": "stream",
|
| 852 |
+
"text": [
|
| 853 |
+
"Fitting TabularPredictor for label: X26_mean ...\n"
|
| 854 |
+
]
|
| 855 |
+
},
|
| 856 |
+
{
|
| 857 |
+
"name": "stderr",
|
| 858 |
+
"output_type": "stream",
|
| 859 |
+
"text": [
|
| 860 |
+
"Fitting AutoMLPipelineFeatureGenerator...\n",
|
| 861 |
+
"\tAvailable Memory: 7763.00 MB\n",
|
| 862 |
+
"\tTrain Data (Original) Memory Usage: 182.29 MB (2.3% of available memory)\n",
|
| 863 |
+
"\tInferring data type of each feature based on column values. Set feature_metadata_in to manually specify special dtypes of the features.\n",
|
| 864 |
+
"\tStage 1 Generators:\n",
|
| 865 |
+
"\t\tFitting AsTypeFeatureGenerator...\n",
|
| 866 |
+
"\tStage 2 Generators:\n",
|
| 867 |
+
"\t\tFitting FillNaFeatureGenerator...\n",
|
| 868 |
+
"\tStage 3 Generators:\n",
|
| 869 |
+
"\t\tFitting IdentityFeatureGenerator...\n",
|
| 870 |
+
"\tStage 4 Generators:\n",
|
| 871 |
+
"\t\tFitting DropUniqueFeatureGenerator...\n",
|
| 872 |
+
"\tStage 5 Generators:\n",
|
| 873 |
+
"\t\tFitting DropDuplicatesFeatureGenerator...\n",
|
| 874 |
+
"\tTypes of features in original data (raw dtype, special dtypes):\n",
|
| 875 |
+
"\t\t('float', []) : 813 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 876 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 877 |
+
"\tTypes of features in processed data (raw dtype, special dtypes):\n",
|
| 878 |
+
"\t\t('float', []) : 813 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 879 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 880 |
+
"\t6.5s = Fit runtime\n",
|
| 881 |
+
"\t935 features in original data used to generate 935 features in processed data.\n",
|
| 882 |
+
"\tTrain Data (Processed) Memory Usage: 182.29 MB (2.4% of available memory)\n",
|
| 883 |
+
"Data preprocessing and feature engineering runtime = 6.81s ...\n",
|
| 884 |
+
"AutoGluon will gauge predictive performance using evaluation metric: 'root_mean_squared_error'\n",
|
| 885 |
+
"\tThis metric's sign has been flipped to adhere to being higher_is_better. The metric score can be multiplied by -1 to get the metric value.\n",
|
| 886 |
+
"\tTo change this, specify the eval_metric parameter of Predictor()\n",
|
| 887 |
+
"Automatically generating train/validation split with holdout_frac=0.05765283767267025, Train Rows: 40863, Val Rows: 2500\n",
|
| 888 |
+
"User-specified model hyperparameters to be fit:\n",
|
| 889 |
+
"{\n",
|
| 890 |
+
"\t'NN_TORCH': {},\n",
|
| 891 |
+
"\t'GBM': [{'extra_trees': True, 'ag_args': {'name_suffix': 'XT'}}, {}, 'GBMLarge'],\n",
|
| 892 |
+
"\t'FASTAI': {},\n",
|
| 893 |
+
"\t'RF': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 894 |
+
"\t'XT': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 895 |
+
"\t'KNN': [{'weights': 'uniform', 'ag_args': {'name_suffix': 'Unif'}}, {'weights': 'distance', 'ag_args': {'name_suffix': 'Dist'}}],\n",
|
| 896 |
+
"}\n",
|
| 897 |
+
"Fitting 9 L1 models ...\n",
|
| 898 |
+
"Fitting model: KNeighborsUnif ...\n",
|
| 899 |
+
"\t-75.2345\t = Validation score (-root_mean_squared_error)\n",
|
| 900 |
+
"\t1.63s\t = Training runtime\n",
|
| 901 |
+
"\t2.42s\t = Validation runtime\n",
|
| 902 |
+
"Fitting model: KNeighborsDist ...\n",
|
| 903 |
+
"\t-77.2557\t = Validation score (-root_mean_squared_error)\n",
|
| 904 |
+
"\t1.57s\t = Training runtime\n",
|
| 905 |
+
"\t2.46s\t = Validation runtime\n",
|
| 906 |
+
"Fitting model: LightGBMXT ...\n",
|
| 907 |
+
"\t-56.0706\t = Validation score (-root_mean_squared_error)\n",
|
| 908 |
+
"\t45.17s\t = Training runtime\n",
|
| 909 |
+
"\t0.06s\t = Validation runtime\n",
|
| 910 |
+
"Fitting model: LightGBM ...\n",
|
| 911 |
+
"\t-54.6852\t = Validation score (-root_mean_squared_error)\n",
|
| 912 |
+
"\t41.69s\t = Training runtime\n",
|
| 913 |
+
"\t0.04s\t = Validation runtime\n",
|
| 914 |
+
"Fitting model: RandomForestMSE ...\n",
|
| 915 |
+
"\t-55.0949\t = Validation score (-root_mean_squared_error)\n",
|
| 916 |
+
"\t9653.14s\t = Training runtime\n",
|
| 917 |
+
"\t0.3s\t = Validation runtime\n",
|
| 918 |
+
"Fitting model: ExtraTreesMSE ...\n",
|
| 919 |
+
"\t-55.9584\t = Validation score (-root_mean_squared_error)\n",
|
| 920 |
+
"\t1874.15s\t = Training runtime\n",
|
| 921 |
+
"\t0.27s\t = Validation runtime\n",
|
| 922 |
+
"Fitting model: NeuralNetFastAI ...\n",
|
| 923 |
+
"\t-57.9006\t = Validation score (-root_mean_squared_error)\n",
|
| 924 |
+
"\t159.0s\t = Training runtime\n",
|
| 925 |
+
"\t0.22s\t = Validation runtime\n",
|
| 926 |
+
"Fitting model: NeuralNetTorch ...\n",
|
| 927 |
+
"\t-59.0582\t = Validation score (-root_mean_squared_error)\n",
|
| 928 |
+
"\t155.0s\t = Training runtime\n",
|
| 929 |
+
"\t0.27s\t = Validation runtime\n",
|
| 930 |
+
"Fitting model: LightGBMLarge ...\n"
|
| 931 |
+
]
|
| 932 |
+
},
|
| 933 |
+
{
|
| 934 |
+
"name": "stdout",
|
| 935 |
+
"output_type": "stream",
|
| 936 |
+
"text": [
|
| 937 |
+
"[1000]\tvalid_set's rmse: 53.3837\n"
|
| 938 |
+
]
|
| 939 |
+
},
|
| 940 |
+
{
|
| 941 |
+
"name": "stderr",
|
| 942 |
+
"output_type": "stream",
|
| 943 |
+
"text": [
|
| 944 |
+
"\t-53.3795\t = Validation score (-root_mean_squared_error)\n",
|
| 945 |
+
"\t442.04s\t = Training runtime\n",
|
| 946 |
+
"\t0.13s\t = Validation runtime\n",
|
| 947 |
+
"Fitting model: WeightedEnsemble_L2 ...\n",
|
| 948 |
+
"\tEnsemble Weights: {'LightGBMLarge': 0.84, 'NeuralNetFastAI': 0.16}\n",
|
| 949 |
+
"\t-53.1964\t = Validation score (-root_mean_squared_error)\n",
|
| 950 |
+
"\t0.03s\t = Training runtime\n",
|
| 951 |
+
"\t0.0s\t = Validation runtime\n",
|
| 952 |
+
"AutoGluon training complete, total runtime = 12390.51s ... Best model: WeightedEnsemble_L2 | Estimated inference throughput: 7137.6 rows/s (2500 batch size)\n",
|
| 953 |
+
"TabularPredictor saved. To load, use: predictor = TabularPredictor.load(\"multilabel_predictor_source\\Predictor_X26_mean\")\n",
|
| 954 |
+
"Verbosity: 2 (Standard Logging)\n",
|
| 955 |
+
"=================== System Info ===================\n",
|
| 956 |
+
"AutoGluon Version: 1.1.1\n",
|
| 957 |
+
"Python Version: 3.10.11\n",
|
| 958 |
+
"Operating System: Windows\n",
|
| 959 |
+
"Platform Machine: AMD64\n",
|
| 960 |
+
"Platform Version: 10.0.22631\n",
|
| 961 |
+
"CPU Count: 12\n",
|
| 962 |
+
"Memory Avail: 7.35 GB / 15.79 GB (46.5%)\n",
|
| 963 |
+
"Disk Space Avail: 72.47 GB / 150.79 GB (48.1%)\n",
|
| 964 |
+
"===================================================\n",
|
| 965 |
+
"No presets specified! To achieve strong results with AutoGluon, it is recommended to use the available presets.\n",
|
| 966 |
+
"\tRecommended Presets (For more details refer to https://auto.gluon.ai/stable/tutorials/tabular/tabular-essentials.html#presets):\n",
|
| 967 |
+
"\tpresets='best_quality' : Maximize accuracy. Default time_limit=3600.\n",
|
| 968 |
+
"\tpresets='high_quality' : Strong accuracy with fast inference speed. Default time_limit=3600.\n",
|
| 969 |
+
"\tpresets='good_quality' : Good accuracy with very fast inference speed. Default time_limit=3600.\n",
|
| 970 |
+
"\tpresets='medium_quality' : Fast training time, ideal for initial prototyping.\n",
|
| 971 |
+
"Warning: Training may take a very long time because `time_limit` was not specified and `train_data` is large (43363 samples, 191.84 MB).\n",
|
| 972 |
+
"\tConsider setting `time_limit` to ensure training finishes within an expected duration or experiment with a small portion of `train_data` to identify an ideal `presets` and `hyperparameters` configuration.\n",
|
| 973 |
+
"Beginning AutoGluon training ...\n",
|
| 974 |
+
"AutoGluon will save models to \"multilabel_predictor_source\\Predictor_X50_mean\"\n",
|
| 975 |
+
"Train Data Rows: 43363\n",
|
| 976 |
+
"Train Data Columns: 936\n",
|
| 977 |
+
"Label Column: X50_mean\n",
|
| 978 |
+
"Problem Type: regression\n",
|
| 979 |
+
"Preprocessing data ...\n"
|
| 980 |
+
]
|
| 981 |
+
},
|
| 982 |
+
{
|
| 983 |
+
"name": "stdout",
|
| 984 |
+
"output_type": "stream",
|
| 985 |
+
"text": [
|
| 986 |
+
"Fitting TabularPredictor for label: X50_mean ...\n"
|
| 987 |
+
]
|
| 988 |
+
},
|
| 989 |
+
{
|
| 990 |
+
"name": "stderr",
|
| 991 |
+
"output_type": "stream",
|
| 992 |
+
"text": [
|
| 993 |
+
"Using Feature Generators to preprocess the data ...\n",
|
| 994 |
+
"Fitting AutoMLPipelineFeatureGenerator...\n",
|
| 995 |
+
"\tAvailable Memory: 7495.31 MB\n",
|
| 996 |
+
"\tTrain Data (Original) Memory Usage: 182.62 MB (2.4% of available memory)\n",
|
| 997 |
+
"\tInferring data type of each feature based on column values. Set feature_metadata_in to manually specify special dtypes of the features.\n",
|
| 998 |
+
"\tStage 1 Generators:\n",
|
| 999 |
+
"\t\tFitting AsTypeFeatureGenerator...\n",
|
| 1000 |
+
"\tStage 2 Generators:\n",
|
| 1001 |
+
"\t\tFitting FillNaFeatureGenerator...\n",
|
| 1002 |
+
"\tStage 3 Generators:\n",
|
| 1003 |
+
"\t\tFitting IdentityFeatureGenerator...\n",
|
| 1004 |
+
"\tStage 4 Generators:\n",
|
| 1005 |
+
"\t\tFitting DropUniqueFeatureGenerator...\n",
|
| 1006 |
+
"\tStage 5 Generators:\n",
|
| 1007 |
+
"\t\tFitting DropDuplicatesFeatureGenerator...\n",
|
| 1008 |
+
"\tTypes of features in original data (raw dtype, special dtypes):\n",
|
| 1009 |
+
"\t\t('float', []) : 814 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 1010 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 1011 |
+
"\tTypes of features in processed data (raw dtype, special dtypes):\n",
|
| 1012 |
+
"\t\t('float', []) : 814 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 1013 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 1014 |
+
"\t6.4s = Fit runtime\n",
|
| 1015 |
+
"\t936 features in original data used to generate 936 features in processed data.\n",
|
| 1016 |
+
"\tTrain Data (Processed) Memory Usage: 182.62 MB (2.4% of available memory)\n",
|
| 1017 |
+
"Data preprocessing and feature engineering runtime = 6.79s ...\n",
|
| 1018 |
+
"AutoGluon will gauge predictive performance using evaluation metric: 'root_mean_squared_error'\n",
|
| 1019 |
+
"\tThis metric's sign has been flipped to adhere to being higher_is_better. The metric score can be multiplied by -1 to get the metric value.\n",
|
| 1020 |
+
"\tTo change this, specify the eval_metric parameter of Predictor()\n",
|
| 1021 |
+
"Automatically generating train/validation split with holdout_frac=0.05765283767267025, Train Rows: 40863, Val Rows: 2500\n",
|
| 1022 |
+
"User-specified model hyperparameters to be fit:\n",
|
| 1023 |
+
"{\n",
|
| 1024 |
+
"\t'NN_TORCH': {},\n",
|
| 1025 |
+
"\t'GBM': [{'extra_trees': True, 'ag_args': {'name_suffix': 'XT'}}, {}, 'GBMLarge'],\n",
|
| 1026 |
+
"\t'FASTAI': {},\n",
|
| 1027 |
+
"\t'RF': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 1028 |
+
"\t'XT': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 1029 |
+
"\t'KNN': [{'weights': 'uniform', 'ag_args': {'name_suffix': 'Unif'}}, {'weights': 'distance', 'ag_args': {'name_suffix': 'Dist'}}],\n",
|
| 1030 |
+
"}\n",
|
| 1031 |
+
"Fitting 9 L1 models ...\n",
|
| 1032 |
+
"Fitting model: KNeighborsUnif ...\n",
|
| 1033 |
+
"\t-0.6334\t = Validation score (-root_mean_squared_error)\n",
|
| 1034 |
+
"\t1.99s\t = Training runtime\n",
|
| 1035 |
+
"\t2.73s\t = Validation runtime\n",
|
| 1036 |
+
"Fitting model: KNeighborsDist ...\n",
|
| 1037 |
+
"\t-0.6393\t = Validation score (-root_mean_squared_error)\n",
|
| 1038 |
+
"\t1.95s\t = Training runtime\n",
|
| 1039 |
+
"\t2.72s\t = Validation runtime\n",
|
| 1040 |
+
"Fitting model: LightGBMXT ...\n"
|
| 1041 |
+
]
|
| 1042 |
+
},
|
| 1043 |
+
{
|
| 1044 |
+
"name": "stdout",
|
| 1045 |
+
"output_type": "stream",
|
| 1046 |
+
"text": [
|
| 1047 |
+
"[1000]\tvalid_set's rmse: 0.361925\n",
|
| 1048 |
+
"[2000]\tvalid_set's rmse: 0.357162\n",
|
| 1049 |
+
"[3000]\tvalid_set's rmse: 0.355106\n",
|
| 1050 |
+
"[4000]\tvalid_set's rmse: 0.353916\n",
|
| 1051 |
+
"[5000]\tvalid_set's rmse: 0.353093\n",
|
| 1052 |
+
"[6000]\tvalid_set's rmse: 0.352683\n",
|
| 1053 |
+
"[7000]\tvalid_set's rmse: 0.352526\n",
|
| 1054 |
+
"[8000]\tvalid_set's rmse: 0.352398\n",
|
| 1055 |
+
"[9000]\tvalid_set's rmse: 0.352323\n",
|
| 1056 |
+
"[10000]\tvalid_set's rmse: 0.352234\n"
|
| 1057 |
+
]
|
| 1058 |
+
},
|
| 1059 |
+
{
|
| 1060 |
+
"name": "stderr",
|
| 1061 |
+
"output_type": "stream",
|
| 1062 |
+
"text": [
|
| 1063 |
+
"\t-0.3522\t = Validation score (-root_mean_squared_error)\n",
|
| 1064 |
+
"\t744.88s\t = Training runtime\n",
|
| 1065 |
+
"\t0.8s\t = Validation runtime\n",
|
| 1066 |
+
"Fitting model: LightGBM ...\n"
|
| 1067 |
+
]
|
| 1068 |
+
},
|
| 1069 |
+
{
|
| 1070 |
+
"name": "stdout",
|
| 1071 |
+
"output_type": "stream",
|
| 1072 |
+
"text": [
|
| 1073 |
+
"[1000]\tvalid_set's rmse: 0.352549\n",
|
| 1074 |
+
"[2000]\tvalid_set's rmse: 0.349969\n",
|
| 1075 |
+
"[3000]\tvalid_set's rmse: 0.348952\n",
|
| 1076 |
+
"[4000]\tvalid_set's rmse: 0.348591\n",
|
| 1077 |
+
"[5000]\tvalid_set's rmse: 0.348339\n",
|
| 1078 |
+
"[6000]\tvalid_set's rmse: 0.348147\n",
|
| 1079 |
+
"[7000]\tvalid_set's rmse: 0.348034\n",
|
| 1080 |
+
"[8000]\tvalid_set's rmse: 0.347988\n",
|
| 1081 |
+
"[9000]\tvalid_set's rmse: 0.347937\n",
|
| 1082 |
+
"[10000]\tvalid_set's rmse: 0.347919\n"
|
| 1083 |
+
]
|
| 1084 |
+
},
|
| 1085 |
+
{
|
| 1086 |
+
"name": "stderr",
|
| 1087 |
+
"output_type": "stream",
|
| 1088 |
+
"text": [
|
| 1089 |
+
"\t-0.3479\t = Validation score (-root_mean_squared_error)\n",
|
| 1090 |
+
"\t921.95s\t = Training runtime\n",
|
| 1091 |
+
"\t0.8s\t = Validation runtime\n",
|
| 1092 |
+
"Fitting model: RandomForestMSE ...\n",
|
| 1093 |
+
"\t-0.344\t = Validation score (-root_mean_squared_error)\n",
|
| 1094 |
+
"\t3068.82s\t = Training runtime\n",
|
| 1095 |
+
"\t0.21s\t = Validation runtime\n",
|
| 1096 |
+
"Fitting model: ExtraTreesMSE ...\n",
|
| 1097 |
+
"\t-0.3735\t = Validation score (-root_mean_squared_error)\n",
|
| 1098 |
+
"\t1075.89s\t = Training runtime\n",
|
| 1099 |
+
"\t0.21s\t = Validation runtime\n",
|
| 1100 |
+
"Fitting model: NeuralNetFastAI ...\n",
|
| 1101 |
+
"\t-0.397\t = Validation score (-root_mean_squared_error)\n",
|
| 1102 |
+
"\t161.54s\t = Training runtime\n",
|
| 1103 |
+
"\t0.25s\t = Validation runtime\n",
|
| 1104 |
+
"Fitting model: NeuralNetTorch ...\n",
|
| 1105 |
+
"\t-0.3914\t = Validation score (-root_mean_squared_error)\n",
|
| 1106 |
+
"\t251.87s\t = Training runtime\n",
|
| 1107 |
+
"\t0.53s\t = Validation runtime\n",
|
| 1108 |
+
"Fitting model: LightGBMLarge ...\n"
|
| 1109 |
+
]
|
| 1110 |
+
},
|
| 1111 |
+
{
|
| 1112 |
+
"name": "stdout",
|
| 1113 |
+
"output_type": "stream",
|
| 1114 |
+
"text": [
|
| 1115 |
+
"[1000]\tvalid_set's rmse: 0.330805\n",
|
| 1116 |
+
"[2000]\tvalid_set's rmse: 0.329588\n",
|
| 1117 |
+
"[3000]\tvalid_set's rmse: 0.329333\n",
|
| 1118 |
+
"[4000]\tvalid_set's rmse: 0.329259\n",
|
| 1119 |
+
"[5000]\tvalid_set's rmse: 0.329238\n",
|
| 1120 |
+
"[6000]\tvalid_set's rmse: 0.329229\n",
|
| 1121 |
+
"[7000]\tvalid_set's rmse: 0.329227\n",
|
| 1122 |
+
"[8000]\tvalid_set's rmse: 0.329226\n",
|
| 1123 |
+
"[9000]\tvalid_set's rmse: 0.329226\n",
|
| 1124 |
+
"[10000]\tvalid_set's rmse: 0.329226\n"
|
| 1125 |
+
]
|
| 1126 |
+
},
|
| 1127 |
+
{
|
| 1128 |
+
"name": "stderr",
|
| 1129 |
+
"output_type": "stream",
|
| 1130 |
+
"text": [
|
| 1131 |
+
"\t-0.3292\t = Validation score (-root_mean_squared_error)\n",
|
| 1132 |
+
"\t2505.43s\t = Training runtime\n",
|
| 1133 |
+
"\t1.29s\t = Validation runtime\n",
|
| 1134 |
+
"Fitting model: WeightedEnsemble_L2 ...\n",
|
| 1135 |
+
"\tEnsemble Weights: {'LightGBMLarge': 0.857, 'NeuralNetFastAI': 0.095, 'RandomForestMSE': 0.048}\n",
|
| 1136 |
+
"\t-0.3284\t = Validation score (-root_mean_squared_error)\n",
|
| 1137 |
+
"\t0.02s\t = Training runtime\n",
|
| 1138 |
+
"\t0.0s\t = Validation runtime\n",
|
| 1139 |
+
"AutoGluon training complete, total runtime = 8758.55s ... Best model: WeightedEnsemble_L2 | Estimated inference throughput: 1436.0 rows/s (2500 batch size)\n",
|
| 1140 |
+
"TabularPredictor saved. To load, use: predictor = TabularPredictor.load(\"multilabel_predictor_source\\Predictor_X50_mean\")\n",
|
| 1141 |
+
"Verbosity: 2 (Standard Logging)\n",
|
| 1142 |
+
"=================== System Info ===================\n",
|
| 1143 |
+
"AutoGluon Version: 1.1.1\n",
|
| 1144 |
+
"Python Version: 3.10.11\n",
|
| 1145 |
+
"Operating System: Windows\n",
|
| 1146 |
+
"Platform Machine: AMD64\n",
|
| 1147 |
+
"Platform Version: 10.0.22631\n",
|
| 1148 |
+
"CPU Count: 12\n",
|
| 1149 |
+
"Memory Avail: 6.87 GB / 15.79 GB (43.5%)\n",
|
| 1150 |
+
"Disk Space Avail: 70.62 GB / 150.79 GB (46.8%)\n",
|
| 1151 |
+
"===================================================\n",
|
| 1152 |
+
"No presets specified! To achieve strong results with AutoGluon, it is recommended to use the available presets.\n",
|
| 1153 |
+
"\tRecommended Presets (For more details refer to https://auto.gluon.ai/stable/tutorials/tabular/tabular-essentials.html#presets):\n",
|
| 1154 |
+
"\tpresets='best_quality' : Maximize accuracy. Default time_limit=3600.\n",
|
| 1155 |
+
"\tpresets='high_quality' : Strong accuracy with fast inference speed. Default time_limit=3600.\n",
|
| 1156 |
+
"\tpresets='good_quality' : Good accuracy with very fast inference speed. Default time_limit=3600.\n",
|
| 1157 |
+
"\tpresets='medium_quality' : Fast training time, ideal for initial prototyping.\n",
|
| 1158 |
+
"Warning: Training may take a very long time because `time_limit` was not specified and `train_data` is large (43363 samples, 192.18 MB).\n",
|
| 1159 |
+
"\tConsider setting `time_limit` to ensure training finishes within an expected duration or experiment with a small portion of `train_data` to identify an ideal `presets` and `hyperparameters` configuration.\n",
|
| 1160 |
+
"Beginning AutoGluon training ...\n",
|
| 1161 |
+
"AutoGluon will save models to \"multilabel_predictor_source\\Predictor_X3112_mean\"\n",
|
| 1162 |
+
"Train Data Rows: 43363\n",
|
| 1163 |
+
"Train Data Columns: 937\n",
|
| 1164 |
+
"Label Column: X3112_mean\n",
|
| 1165 |
+
"Problem Type: regression\n",
|
| 1166 |
+
"Preprocessing data ...\n",
|
| 1167 |
+
"Using Feature Generators to preprocess the data ...\n",
|
| 1168 |
+
"Fitting AutoMLPipelineFeatureGenerator...\n"
|
| 1169 |
+
]
|
| 1170 |
+
},
|
| 1171 |
+
{
|
| 1172 |
+
"name": "stdout",
|
| 1173 |
+
"output_type": "stream",
|
| 1174 |
+
"text": [
|
| 1175 |
+
"Fitting TabularPredictor for label: X3112_mean ...\n"
|
| 1176 |
+
]
|
| 1177 |
+
},
|
| 1178 |
+
{
|
| 1179 |
+
"name": "stderr",
|
| 1180 |
+
"output_type": "stream",
|
| 1181 |
+
"text": [
|
| 1182 |
+
"\tAvailable Memory: 7019.43 MB\n",
|
| 1183 |
+
"\tTrain Data (Original) Memory Usage: 182.95 MB (2.6% of available memory)\n",
|
| 1184 |
+
"\tInferring data type of each feature based on column values. Set feature_metadata_in to manually specify special dtypes of the features.\n",
|
| 1185 |
+
"\tStage 1 Generators:\n",
|
| 1186 |
+
"\t\tFitting AsTypeFeatureGenerator...\n",
|
| 1187 |
+
"\tStage 2 Generators:\n",
|
| 1188 |
+
"\t\tFitting FillNaFeatureGenerator...\n",
|
| 1189 |
+
"\tStage 3 Generators:\n",
|
| 1190 |
+
"\t\tFitting IdentityFeatureGenerator...\n",
|
| 1191 |
+
"\tStage 4 Generators:\n",
|
| 1192 |
+
"\t\tFitting DropUniqueFeatureGenerator...\n",
|
| 1193 |
+
"\tStage 5 Generators:\n",
|
| 1194 |
+
"\t\tFitting DropDuplicatesFeatureGenerator...\n",
|
| 1195 |
+
"\tTypes of features in original data (raw dtype, special dtypes):\n",
|
| 1196 |
+
"\t\t('float', []) : 815 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 1197 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 1198 |
+
"\tTypes of features in processed data (raw dtype, special dtypes):\n",
|
| 1199 |
+
"\t\t('float', []) : 815 | ['WORLDCLIM_BIO1_annual_mean_temperature', 'WORLDCLIM_BIO12_annual_precipitation', 'WORLDCLIM_BIO13.BIO14_delta_precipitation_of_wettest_and_dryest_month', 'WORLDCLIM_BIO15_precipitation_seasonality', 'WORLDCLIM_BIO4_temperature_seasonality', ...]\n",
|
| 1200 |
+
"\t\t('int', []) : 122 | ['id', 'SOIL_bdod_0.5cm_mean_0.01_deg', 'SOIL_bdod_100.200cm_mean_0.01_deg', 'SOIL_bdod_15.30cm_mean_0.01_deg', 'SOIL_bdod_30.60cm_mean_0.01_deg', ...]\n",
|
| 1201 |
+
"\t5.0s = Fit runtime\n",
|
| 1202 |
+
"\t937 features in original data used to generate 937 features in processed data.\n",
|
| 1203 |
+
"\tTrain Data (Processed) Memory Usage: 182.95 MB (2.6% of available memory)\n",
|
| 1204 |
+
"Data preprocessing and feature engineering runtime = 5.29s ...\n",
|
| 1205 |
+
"AutoGluon will gauge predictive performance using evaluation metric: 'root_mean_squared_error'\n",
|
| 1206 |
+
"\tThis metric's sign has been flipped to adhere to being higher_is_better. The metric score can be multiplied by -1 to get the metric value.\n",
|
| 1207 |
+
"\tTo change this, specify the eval_metric parameter of Predictor()\n",
|
| 1208 |
+
"Automatically generating train/validation split with holdout_frac=0.05765283767267025, Train Rows: 40863, Val Rows: 2500\n",
|
| 1209 |
+
"User-specified model hyperparameters to be fit:\n",
|
| 1210 |
+
"{\n",
|
| 1211 |
+
"\t'NN_TORCH': {},\n",
|
| 1212 |
+
"\t'GBM': [{'extra_trees': True, 'ag_args': {'name_suffix': 'XT'}}, {}, 'GBMLarge'],\n",
|
| 1213 |
+
"\t'FASTAI': {},\n",
|
| 1214 |
+
"\t'RF': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 1215 |
+
"\t'XT': [{'criterion': 'gini', 'ag_args': {'name_suffix': 'Gini', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'entropy', 'ag_args': {'name_suffix': 'Entr', 'problem_types': ['binary', 'multiclass']}}, {'criterion': 'squared_error', 'ag_args': {'name_suffix': 'MSE', 'problem_types': ['regression', 'quantile']}}],\n",
|
| 1216 |
+
"\t'KNN': [{'weights': 'uniform', 'ag_args': {'name_suffix': 'Unif'}}, {'weights': 'distance', 'ag_args': {'name_suffix': 'Dist'}}],\n",
|
| 1217 |
+
"}\n",
|
| 1218 |
+
"Fitting 9 L1 models ...\n",
|
| 1219 |
+
"Fitting model: KNeighborsUnif ...\n",
|
| 1220 |
+
"\t-2270.871\t = Validation score (-root_mean_squared_error)\n",
|
| 1221 |
+
"\t1.37s\t = Training runtime\n",
|
| 1222 |
+
"\t2.24s\t = Validation runtime\n",
|
| 1223 |
+
"Fitting model: KNeighborsDist ...\n",
|
| 1224 |
+
"\t-2230.0395\t = Validation score (-root_mean_squared_error)\n",
|
| 1225 |
+
"\t1.34s\t = Training runtime\n",
|
| 1226 |
+
"\t2.34s\t = Validation runtime\n",
|
| 1227 |
+
"Fitting model: LightGBMXT ...\n"
|
| 1228 |
+
]
|
| 1229 |
+
},
|
| 1230 |
+
{
|
| 1231 |
+
"name": "stdout",
|
| 1232 |
+
"output_type": "stream",
|
| 1233 |
+
"text": [
|
| 1234 |
+
"[1000]\tvalid_set's rmse: 1470.67\n",
|
| 1235 |
+
"[2000]\tvalid_set's rmse: 1460.77\n",
|
| 1236 |
+
"[3000]\tvalid_set's rmse: 1453.2\n",
|
| 1237 |
+
"[4000]\tvalid_set's rmse: 1449.16\n",
|
| 1238 |
+
"[5000]\tvalid_set's rmse: 1448\n",
|
| 1239 |
+
"[6000]\tvalid_set's rmse: 1447.65\n",
|
| 1240 |
+
"[7000]\tvalid_set's rmse: 1447.57\n",
|
| 1241 |
+
"[8000]\tvalid_set's rmse: 1446.92\n",
|
| 1242 |
+
"[9000]\tvalid_set's rmse: 1446.78\n",
|
| 1243 |
+
"[10000]\tvalid_set's rmse: 1446.71\n"
|
| 1244 |
+
]
|
| 1245 |
+
},
|
| 1246 |
+
{
|
| 1247 |
+
"name": "stderr",
|
| 1248 |
+
"output_type": "stream",
|
| 1249 |
+
"text": [
|
| 1250 |
+
"\t-1446.6537\t = Validation score (-root_mean_squared_error)\n",
|
| 1251 |
+
"\t680.41s\t = Training runtime\n",
|
| 1252 |
+
"\t0.54s\t = Validation runtime\n",
|
| 1253 |
+
"Fitting model: LightGBM ...\n"
|
| 1254 |
+
]
|
| 1255 |
+
},
|
| 1256 |
+
{
|
| 1257 |
+
"name": "stdout",
|
| 1258 |
+
"output_type": "stream",
|
| 1259 |
+
"text": [
|
| 1260 |
+
"[1000]\tvalid_set's rmse: 1401.6\n",
|
| 1261 |
+
"[2000]\tvalid_set's rmse: 1389.58\n",
|
| 1262 |
+
"[3000]\tvalid_set's rmse: 1386.45\n",
|
| 1263 |
+
"[4000]\tvalid_set's rmse: 1385.03\n",
|
| 1264 |
+
"[5000]\tvalid_set's rmse: 1384.81\n",
|
| 1265 |
+
"[6000]\tvalid_set's rmse: 1384.61\n",
|
| 1266 |
+
"[7000]\tvalid_set's rmse: 1384.48\n",
|
| 1267 |
+
"[8000]\tvalid_set's rmse: 1384.34\n",
|
| 1268 |
+
"[9000]\tvalid_set's rmse: 1384.35\n"
|
| 1269 |
+
]
|
| 1270 |
+
},
|
| 1271 |
+
{
|
| 1272 |
+
"name": "stderr",
|
| 1273 |
+
"output_type": "stream",
|
| 1274 |
+
"text": [
|
| 1275 |
+
"\t-1384.3118\t = Validation score (-root_mean_squared_error)\n",
|
| 1276 |
+
"\t820.56s\t = Training runtime\n",
|
| 1277 |
+
"\t0.42s\t = Validation runtime\n",
|
| 1278 |
+
"Fitting model: RandomForestMSE ...\n",
|
| 1279 |
+
"\t-1349.2685\t = Validation score (-root_mean_squared_error)\n",
|
| 1280 |
+
"\t4440.72s\t = Training runtime\n",
|
| 1281 |
+
"\t0.21s\t = Validation runtime\n",
|
| 1282 |
+
"Fitting model: ExtraTreesMSE ...\n",
|
| 1283 |
+
"\t-1451.9243\t = Validation score (-root_mean_squared_error)\n",
|
| 1284 |
+
"\t1308.72s\t = Training runtime\n",
|
| 1285 |
+
"\t0.22s\t = Validation runtime\n",
|
| 1286 |
+
"Fitting model: NeuralNetFastAI ...\n",
|
| 1287 |
+
"\t-1514.4165\t = Validation score (-root_mean_squared_error)\n",
|
| 1288 |
+
"\t158.34s\t = Training runtime\n",
|
| 1289 |
+
"\t0.24s\t = Validation runtime\n",
|
| 1290 |
+
"Fitting model: NeuralNetTorch ...\n",
|
| 1291 |
+
"\t-1537.7455\t = Validation score (-root_mean_squared_error)\n",
|
| 1292 |
+
"\t143.11s\t = Training runtime\n",
|
| 1293 |
+
"\t0.53s\t = Validation runtime\n",
|
| 1294 |
+
"Fitting model: LightGBMLarge ...\n"
|
| 1295 |
+
]
|
| 1296 |
+
},
|
| 1297 |
+
{
|
| 1298 |
+
"name": "stdout",
|
| 1299 |
+
"output_type": "stream",
|
| 1300 |
+
"text": [
|
| 1301 |
+
"[1000]\tvalid_set's rmse: 1327.67\n",
|
| 1302 |
+
"[2000]\tvalid_set's rmse: 1325.67\n",
|
| 1303 |
+
"[3000]\tvalid_set's rmse: 1325.22\n",
|
| 1304 |
+
"[4000]\tvalid_set's rmse: 1325.1\n",
|
| 1305 |
+
"[5000]\tvalid_set's rmse: 1325.06\n",
|
| 1306 |
+
"[6000]\tvalid_set's rmse: 1325.05\n",
|
| 1307 |
+
"[7000]\tvalid_set's rmse: 1325.04\n",
|
| 1308 |
+
"[8000]\tvalid_set's rmse: 1325.04\n",
|
| 1309 |
+
"[9000]\tvalid_set's rmse: 1325.04\n",
|
| 1310 |
+
"[10000]\tvalid_set's rmse: 1325.04\n"
|
| 1311 |
+
]
|
| 1312 |
+
},
|
| 1313 |
+
{
|
| 1314 |
+
"name": "stderr",
|
| 1315 |
+
"output_type": "stream",
|
| 1316 |
+
"text": [
|
| 1317 |
+
"\t-1325.0433\t = Validation score (-root_mean_squared_error)\n",
|
| 1318 |
+
"\t2420.99s\t = Training runtime\n",
|
| 1319 |
+
"\t1.04s\t = Validation runtime\n",
|
| 1320 |
+
"Fitting model: WeightedEnsemble_L2 ...\n",
|
| 1321 |
+
"\tEnsemble Weights: {'LightGBMLarge': 0.571, 'RandomForestMSE': 0.333, 'NeuralNetFastAI': 0.095}\n",
|
| 1322 |
+
"\t-1313.9254\t = Validation score (-root_mean_squared_error)\n",
|
| 1323 |
+
"\t0.03s\t = Training runtime\n",
|
| 1324 |
+
"\t0.0s\t = Validation runtime\n",
|
| 1325 |
+
"AutoGluon training complete, total runtime = 9995.55s ... Best model: WeightedEnsemble_L2 | Estimated inference throughput: 1683.5 rows/s (2500 batch size)\n",
|
| 1326 |
+
"TabularPredictor saved. To load, use: predictor = TabularPredictor.load(\"multilabel_predictor_source\\Predictor_X3112_mean\")\n"
|
| 1327 |
+
]
|
| 1328 |
+
},
|
| 1329 |
+
{
|
| 1330 |
+
"name": "stdout",
|
| 1331 |
+
"output_type": "stream",
|
| 1332 |
+
"text": [
|
| 1333 |
+
"MultilabelPredictor saved to disk. Load with: MultilabelPredictor.load('multilabel_predictor_source')\n"
|
| 1334 |
+
]
|
| 1335 |
+
}
|
| 1336 |
+
],
|
| 1337 |
+
"source": [
|
| 1338 |
+
"# Define paths\n",
|
| 1339 |
+
"train_csv_path = 'train.csv'\n",
|
| 1340 |
+
"train_image_dir = 'train_images'\n",
|
| 1341 |
+
"test_csv_path = 'test.csv'\n",
|
| 1342 |
+
"test_image_dir = 'test_images'\n",
|
| 1343 |
+
"output_path = 'prediction.csv'\n",
|
| 1344 |
+
"\n",
|
| 1345 |
+
"# Load train and test datasets\n",
|
| 1346 |
+
"train_df = pd.read_csv(train_csv_path)\n",
|
| 1347 |
+
"\n",
|
| 1348 |
+
"# Columns for ancillary data and target traits\n",
|
| 1349 |
+
"ancillary_columns = train_df.columns[:-6] # First 164 columns are ancillary data\n",
|
| 1350 |
+
"target_columns = train_df.columns[-6:] # Last 6 columns are target traits\n",
|
| 1351 |
+
"\n",
|
| 1352 |
+
"# Load Vision Transformer model and feature extractor\n",
|
| 1353 |
+
"# device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')\n",
|
| 1354 |
+
"# vit_model = ViTModel.from_pretrained('google/vit-base-patch16-224-in21k').to(device)\n",
|
| 1355 |
+
"# feature_extractor = ViTFeatureExtractor.from_pretrained('google/vit-base-patch16-224-in21k')\n",
|
| 1356 |
+
"\n",
|
| 1357 |
+
"# Generate image embeddings for train and test datasets\n",
|
| 1358 |
+
"print(\"Extracting image embeddings for training data...\")\n",
|
| 1359 |
+
"# train_image_embeddings = preprocess_images(train_df, train_image_dir)\n",
|
| 1360 |
+
"with open('train_image_embeddings.pkl', 'rb') as f:\n",
|
| 1361 |
+
" train_image_embeddings = pickle.load(f)\n",
|
| 1362 |
+
"\n",
|
| 1363 |
+
"# Combine ancillary data and image embeddings\n",
|
| 1364 |
+
"print(\"Combining ancillary data and image embeddings...\")\n",
|
| 1365 |
+
"train_combined = pd.concat([train_df[ancillary_columns], train_image_embeddings, train_df[target_columns]], axis=1)\n",
|
| 1366 |
+
"\n",
|
| 1367 |
+
"# Initialize MultilabelPredictor\n",
|
| 1368 |
+
"targets = list(target_columns)\n",
|
| 1369 |
+
"problem_types = ['regression'] * len(targets)\n",
|
| 1370 |
+
"eval_metrics = ['mean_absolute_percentage_error'] * len(targets)\n",
|
| 1371 |
+
"hyperparameters = {\n",
|
| 1372 |
+
"\t'NN_TORCH': {},\n",
|
| 1373 |
+
"\t'GBM': ['GBMLarge'],\n",
|
| 1374 |
+
"\t'FASTAI': {}\n",
|
| 1375 |
+
"}\n",
|
| 1376 |
+
"\n",
|
| 1377 |
+
"multi_predictor = MultilabelPredictor(\n",
|
| 1378 |
+
" labels=targets,\n",
|
| 1379 |
+
" problem_types=problem_types,\n",
|
| 1380 |
+
" # eval_metrics=eval_metrics,\n",
|
| 1381 |
+
" path='multilabel_predictor_source'\n",
|
| 1382 |
+
")\n",
|
| 1383 |
+
"\n",
|
| 1384 |
+
"# Train MultilabelPredictor\n",
|
| 1385 |
+
"print(\"Training MultilabelPredictor...\")\n",
|
| 1386 |
+
"multi_predictor.fit(train_combined, hyperparameters=hyperparameters)\n"
|
| 1387 |
+
]
|
| 1388 |
+
},
|
| 1389 |
+
{
|
| 1390 |
+
"cell_type": "code",
|
| 1391 |
+
"execution_count": 3,
|
| 1392 |
+
"metadata": {},
|
| 1393 |
+
"outputs": [
|
| 1394 |
+
{
|
| 1395 |
+
"name": "stdout",
|
| 1396 |
+
"output_type": "stream",
|
| 1397 |
+
"text": [
|
| 1398 |
+
"Extracting image embeddings for test data...\n",
|
| 1399 |
+
"Making predictions on test data...\n",
|
| 1400 |
+
"Predicting with TabularPredictor for label: X4_mean ...\n",
|
| 1401 |
+
"Predicting with TabularPredictor for label: X11_mean ...\n",
|
| 1402 |
+
"Predicting with TabularPredictor for label: X18_mean ...\n",
|
| 1403 |
+
"Predicting with TabularPredictor for label: X26_mean ...\n",
|
| 1404 |
+
"Predicting with TabularPredictor for label: X50_mean ...\n",
|
| 1405 |
+
"Predicting with TabularPredictor for label: X3112_mean ...\n",
|
| 1406 |
+
"Saving predictions to prediction.csv...\n",
|
| 1407 |
+
"Predictions saved successfully!\n"
|
| 1408 |
+
]
|
| 1409 |
+
}
|
| 1410 |
+
],
|
| 1411 |
+
"source": [
|
| 1412 |
+
"test_df = pd.read_csv(test_csv_path)\n",
|
| 1413 |
+
"print(\"Extracting image embeddings for test data...\")\n",
|
| 1414 |
+
"# test_image_embeddings = preprocess_images(test_df, test_image_dir)\n",
|
| 1415 |
+
"with open('test_image_embeddings.pkl', 'rb') as f:\n",
|
| 1416 |
+
" test_image_embeddings = pickle.load(f)\n",
|
| 1417 |
+
"\n",
|
| 1418 |
+
"test_combined = pd.concat([test_df[ancillary_columns], test_image_embeddings], axis=1)\n",
|
| 1419 |
+
"\n",
|
| 1420 |
+
"# Make predictions on test data\n",
|
| 1421 |
+
"print(\"Making predictions on test data...\")\n",
|
| 1422 |
+
"predictions = multi_predictor.predict(test_combined)\n",
|
| 1423 |
+
"\n",
|
| 1424 |
+
"# Save predictions to CSV\n",
|
| 1425 |
+
"print(f\"Saving predictions to {output_path}...\")\n",
|
| 1426 |
+
"predictions.insert(0, 'id', test_df['id'])\n",
|
| 1427 |
+
"predictions.to_csv(output_path, index=False)\n",
|
| 1428 |
+
"print(\"Predictions saved successfully!\")"
|
| 1429 |
+
]
|
| 1430 |
+
}
|
| 1431 |
+
],
|
| 1432 |
+
"metadata": {
|
| 1433 |
+
"kernelspec": {
|
| 1434 |
+
"display_name": "venv",
|
| 1435 |
+
"language": "python",
|
| 1436 |
+
"name": "python3"
|
| 1437 |
+
},
|
| 1438 |
+
"language_info": {
|
| 1439 |
+
"codemirror_mode": {
|
| 1440 |
+
"name": "ipython",
|
| 1441 |
+
"version": 3
|
| 1442 |
+
},
|
| 1443 |
+
"file_extension": ".py",
|
| 1444 |
+
"mimetype": "text/x-python",
|
| 1445 |
+
"name": "python",
|
| 1446 |
+
"nbconvert_exporter": "python",
|
| 1447 |
+
"pygments_lexer": "ipython3",
|
| 1448 |
+
"version": "3.10.11"
|
| 1449 |
+
}
|
| 1450 |
+
},
|
| 1451 |
+
"nbformat": 4,
|
| 1452 |
+
"nbformat_minor": 2
|
| 1453 |
+
}
|
test_image_embeddings.pkl
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:374282b7d804cbc883af2699716a07dc8eda02ebf9a23a71069c7318a71dab86
|
| 3 |
+
size 19633747
|
train_image_embeddings.pkl
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:056b88ebec27062a9bf88fd79d1a13738e5df95796201bc043095baa2728cfd8
|
| 3 |
+
size 133211731
|
train_test_data.zip
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:e0976b8751e4bd592a26e3bd08fb52f4f743809f2bdac7732278af78e1efae32
|
| 3 |
+
size 301994252
|