File size: 16,936 Bytes
64e892b |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 |
"""
Script 06: Model Evaluation
This script performs comprehensive evaluation of the trained model:
- Confusion matrix visualization
- Per-class metrics analysis
- Ordinal-specific metrics (linear weighted kappa)
- SHAP feature importance analysis
- Error analysis
Usage:
python scripts/06_evaluate.py
"""
import sys
from pathlib import Path
import joblib
import lightgbm as lgb
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import seaborn as sns
import shap
from sklearn.metrics import (
accuracy_score,
balanced_accuracy_score,
classification_report,
cohen_kappa_score,
confusion_matrix,
f1_score,
precision_score,
recall_score,
)
# Add project root to path
project_root = Path(__file__).parent.parent
sys.path.insert(0, str(project_root))
from config.config import (
TEST_PARQUET,
TRAIN_PARQUET,
MODELS_DIR,
FIGURES_DIR,
TARGET_COLUMN,
TARGET_CLASS_NAMES
)
# Set style
plt.style.use('seaborn-v0_8-whitegrid')
def load_model_and_data() -> tuple:
"""Load trained model, metadata, and test data."""
print("Loading model and data...")
# Load model
model_path = MODELS_DIR / 'wildfire_model.txt'
model = lgb.Booster(model_file=str(model_path))
print(f" Model: {model_path}")
# Load metadata
metadata_path = MODELS_DIR / 'model_metadata.joblib'
metadata = joblib.load(metadata_path)
print(f" Metadata: {metadata_path}")
# Load test data
test_df = pd.read_parquet(TEST_PARQUET)
train_df = pd.read_parquet(TRAIN_PARQUET)
print(f" Test data: {len(test_df):,} rows")
return model, metadata, train_df, test_df
def prepare_data(df: pd.DataFrame, feature_names: list) -> tuple:
"""Prepare features and target from dataframe."""
X = df[feature_names].values
y = df[TARGET_COLUMN].values
return X, y
def compute_all_metrics(y_true: np.ndarray, y_pred: np.ndarray, y_proba: np.ndarray) -> dict:
"""Compute comprehensive metrics."""
metrics = {
# Standard metrics
'accuracy': accuracy_score(y_true, y_pred),
'balanced_accuracy': balanced_accuracy_score(y_true, y_pred),
'macro_f1': f1_score(y_true, y_pred, average='macro'),
'weighted_f1': f1_score(y_true, y_pred, average='weighted'),
'macro_precision': precision_score(y_true, y_pred, average='macro'),
'macro_recall': recall_score(y_true, y_pred, average='macro'),
# Ordinal-specific: Linear weighted Cohen's Kappa
# Penalizes predictions farther from true class
'cohen_kappa_linear': cohen_kappa_score(y_true, y_pred, weights='linear'),
'cohen_kappa_quadratic': cohen_kappa_score(y_true, y_pred, weights='quadratic'),
# Per-class metrics
'per_class_precision': precision_score(y_true, y_pred, average=None),
'per_class_recall': recall_score(y_true, y_pred, average=None),
'per_class_f1': f1_score(y_true, y_pred, average=None)
}
return metrics
def print_metrics(metrics: dict) -> None:
"""Print metrics in a formatted way."""
print("\n" + "="*60)
print("EVALUATION METRICS")
print("="*60)
print("\nOverall Metrics:")
print(f" Accuracy: {metrics['accuracy']:.4f}")
print(f" Balanced Accuracy: {metrics['balanced_accuracy']:.4f}")
print(f" Macro F1: {metrics['macro_f1']:.4f}")
print(f" Weighted F1: {metrics['weighted_f1']:.4f}")
print(f" Macro Precision: {metrics['macro_precision']:.4f}")
print(f" Macro Recall: {metrics['macro_recall']:.4f}")
print("\nOrdinal Metrics (penalize distance from true class):")
print(f" Cohen's Kappa (Linear): {metrics['cohen_kappa_linear']:.4f}")
print(f" Cohen's Kappa (Quadratic): {metrics['cohen_kappa_quadratic']:.4f}")
print("\nPer-Class Metrics:")
print(f" {'Class':<10} {'Precision':>10} {'Recall':>10} {'F1':>10}")
print(f" {'-'*40}")
for i, name in enumerate(TARGET_CLASS_NAMES):
print(f" {name:<10} {metrics['per_class_precision'][i]:>10.4f} "
f"{metrics['per_class_recall'][i]:>10.4f} {metrics['per_class_f1'][i]:>10.4f}")
def plot_confusion_matrix(y_true: np.ndarray, y_pred: np.ndarray, save_path: Path) -> None:
"""Plot and save confusion matrix."""
print("\nGenerating confusion matrix...")
cm = confusion_matrix(y_true, y_pred)
cm_normalized = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis]
fig, axes = plt.subplots(1, 2, figsize=(14, 5))
# Raw counts
ax1 = axes[0]
sns.heatmap(cm, annot=True, fmt='d', cmap='Blues', ax=ax1,
xticklabels=TARGET_CLASS_NAMES, yticklabels=TARGET_CLASS_NAMES)
ax1.set_title('Confusion Matrix (Counts)', fontsize=14, fontweight='bold')
ax1.set_xlabel('Predicted')
ax1.set_ylabel('Actual')
# Normalized (percentages)
ax2 = axes[1]
sns.heatmap(cm_normalized, annot=True, fmt='.1%', cmap='Blues', ax=ax2,
xticklabels=TARGET_CLASS_NAMES, yticklabels=TARGET_CLASS_NAMES)
ax2.set_title('Confusion Matrix (Normalized)', fontsize=14, fontweight='bold')
ax2.set_xlabel('Predicted')
ax2.set_ylabel('Actual')
plt.tight_layout()
plt.savefig(save_path, dpi=150, bbox_inches='tight')
plt.close()
print(f" Saved: {save_path}")
def plot_classification_report(y_true: np.ndarray, y_pred: np.ndarray, save_path: Path) -> None:
"""Plot classification metrics as bar chart."""
print("\nGenerating classification report plot...")
report = classification_report(y_true, y_pred, target_names=TARGET_CLASS_NAMES, output_dict=True)
# Convert to DataFrame
df_report = pd.DataFrame(report).T
df_report = df_report.drop(['accuracy', 'macro avg', 'weighted avg'], errors='ignore')
df_report = df_report[['precision', 'recall', 'f1-score']]
fig, ax = plt.subplots(figsize=(10, 6))
x = np.arange(len(TARGET_CLASS_NAMES))
width = 0.25
bars1 = ax.bar(x - width, df_report['precision'], width, label='Precision', color='#3498db')
bars2 = ax.bar(x, df_report['recall'], width, label='Recall', color='#2ecc71')
bars3 = ax.bar(x + width, df_report['f1-score'], width, label='F1-Score', color='#e74c3c')
ax.set_xlabel('Fire Size Class')
ax.set_ylabel('Score')
ax.set_title('Per-Class Classification Metrics', fontsize=14, fontweight='bold')
ax.set_xticks(x)
ax.set_xticklabels(TARGET_CLASS_NAMES)
ax.legend()
ax.set_ylim(0, 1.1)
# Add value labels
for bars in [bars1, bars2, bars3]:
for bar in bars:
height = bar.get_height()
ax.annotate(f'{height:.2f}',
xy=(bar.get_x() + bar.get_width() / 2, height),
xytext=(0, 3), textcoords="offset points",
ha='center', va='bottom', fontsize=8)
plt.tight_layout()
plt.savefig(save_path, dpi=150, bbox_inches='tight')
plt.close()
print(f" Saved: {save_path}")
def plot_shap_importance(model: lgb.Booster, X: np.ndarray,
feature_names: list, save_path: Path,
max_display: int = 20) -> None:
"""Generate SHAP feature importance plots."""
print("\nGenerating SHAP analysis...")
print(f" X shape: {X.shape}")
print(f" Number of feature names: {len(feature_names)}")
# Use a sample for SHAP (faster computation)
sample_size = min(5000, len(X))
np.random.seed(42)
sample_idx = np.random.choice(len(X), sample_size, replace=False)
X_sample = X[sample_idx]
# Create explainer
explainer = shap.TreeExplainer(model)
shap_values = explainer.shap_values(X_sample)
# SHAP values is a list of arrays (one per class for multiclass)
# Average absolute SHAP values across all classes
if isinstance(shap_values, list):
# If it's a list of arrays, each array is (samples, features)
# We want the mean absolute value for each feature across all samples and all classes
mean_shap = np.mean([np.abs(sv).mean(axis=0) for sv in shap_values], axis=0)
else:
# Handle case where shap_values is a single array (samples, features * classes)
# or (samples, features)
mean_shap = np.abs(shap_values).mean(axis=0)
# If we have a multiple of features, it's likely multiclass flattened
num_feats = len(feature_names)
if mean_shap.size > num_feats and mean_shap.size % num_feats == 0:
n_classes = mean_shap.size // num_feats
print(f" Aggregating SHAP values for {n_classes} classes...")
mean_shap = mean_shap.reshape(n_classes, num_feats).mean(axis=0)
# Ensure mean_shap is 1D
if mean_shap.ndim > 1:
mean_shap = mean_shap.flatten()
print(f" Mean SHAP shape: {mean_shap.shape}")
# Handle mismatch between feature_names and mean_shap length
if len(feature_names) != mean_shap.size:
print(f" WARNING: Feature names ({len(feature_names)}) != SHAP values ({mean_shap.size})")
# Trim to match
n = min(len(feature_names), mean_shap.size)
feature_names = feature_names[:n]
mean_shap = mean_shap[:n]
print(f" Trimmed to {n} features")
# Create feature importance DataFrame
importance_df = pd.DataFrame({
'feature': feature_names,
'importance': mean_shap
}).sort_values('importance', ascending=True)
# Plot 1: Feature Importance Bar Chart
plt.figure(figsize=(10, 8))
top_features = importance_df.tail(max_display)
plt.barh(top_features['feature'], top_features['importance'], color='steelblue')
plt.xlabel('Mean |SHAP Value|')
plt.title(f'Top {max_display} Feature Importance (SHAP)', fontsize=14, fontweight='bold')
plt.grid(axis='x', alpha=0.3)
plt.tight_layout()
plt.savefig(save_path, dpi=150, bbox_inches='tight')
plt.close()
print(f" Saved importance plot: {save_path}")
# Plot 2: SHAP Summary Plot (Large Fires)
# Extract SHAP values for Large fire class (class index 2)
shap_values_large = None
num_feats = len(feature_names)
if isinstance(shap_values, list) and len(shap_values) > 2:
# Already a list of arrays per class
shap_values_large = shap_values[2]
elif isinstance(shap_values, np.ndarray):
# Single array - need to reshape if it's (samples, features * classes)
if shap_values.shape[1] == num_feats * 3:
# Reshape from (samples, features*classes) to (samples, classes, features)
# Then extract class 2 (Large fires)
reshaped = shap_values.reshape(shap_values.shape[0], 3, num_feats)
shap_values_large = reshaped[:, 2, :] # Class 2 = Large
print(f" Extracted Large fire SHAP values: {shap_values_large.shape}")
elif shap_values.shape[1] == num_feats:
# Binary or single output - use as-is
shap_values_large = shap_values
if shap_values_large is not None:
summary_path = save_path.parent / f"{save_path.stem}_summary{save_path.suffix}"
plt.figure(figsize=(10, 8))
try:
print(" Generating SHAP summary plot...")
shap.summary_plot(shap_values_large, X_sample, feature_names=feature_names,
max_display=max_display, show=False)
plt.title('SHAP Summary: Large Fire Class', fontsize=14, fontweight='bold')
plt.tight_layout()
plt.savefig(summary_path, dpi=150, bbox_inches='tight')
print(f" Saved summary plot: {summary_path}")
except Exception as e:
print(f" Could not generate summary plot: {e}")
plt.close()
else:
print(" Skipping summary plot (could not extract Large class SHAP values)")
# Print top features
print("\n Top 10 Most Important Features:")
for _, row in importance_df.tail(10).iloc[::-1].iterrows():
print(f" {row['feature']}: {row['importance']:.4f}")
return importance_df
def analyze_errors(test_df: pd.DataFrame, y_true: np.ndarray,
y_pred: np.ndarray, save_path: Path) -> None:
"""Analyze misclassifications."""
print("\nAnalyzing misclassifications...")
# Add predictions to dataframe
test_df = test_df.copy()
test_df['predicted'] = y_pred
test_df['correct'] = y_true == y_pred
errors = test_df[~test_df['correct']]
print(f"\n Total errors: {len(errors):,} ({len(errors)/len(test_df)*100:.1f}%)")
# Error types
print("\n Error Distribution:")
for true_class in range(3):
for pred_class in range(3):
if true_class != pred_class:
count = ((y_true == true_class) & (y_pred == pred_class)).sum()
if count > 0:
pct = count / len(errors) * 100
true_name = TARGET_CLASS_NAMES[true_class]
pred_name = TARGET_CLASS_NAMES[pred_class]
print(f" {true_name} → {pred_name}: {count:,} ({pct:.1f}%)")
# Adjacent vs non-adjacent errors (important for ordinal)
adjacent_errors = 0
non_adjacent_errors = 0
for true_class, pred_class in zip(y_true[y_true != y_pred], y_pred[y_true != y_pred]):
if abs(true_class - pred_class) == 1:
adjacent_errors += 1
else:
non_adjacent_errors += 1
print(f"\n Ordinal Error Analysis:")
print(f" Adjacent errors (off by 1): {adjacent_errors:,} ({adjacent_errors/len(errors)*100:.1f}%)")
print(f" Non-adjacent errors (off by 2): {non_adjacent_errors:,} ({non_adjacent_errors/len(errors)*100:.1f}%)")
def plot_prediction_distribution(y_true: np.ndarray, y_pred: np.ndarray,
y_proba: np.ndarray, save_path: Path) -> None:
"""Plot prediction probability distributions."""
print("\nGenerating prediction distribution plots...")
fig, axes = plt.subplots(1, 3, figsize=(15, 4))
for i, (ax, class_name) in enumerate(zip(axes, TARGET_CLASS_NAMES)):
# Get probabilities for this class
proba = y_proba[:, i]
# Split by actual class
for true_class in range(3):
mask = y_true == true_class
ax.hist(proba[mask], bins=50, alpha=0.5,
label=f'Actual: {TARGET_CLASS_NAMES[true_class]}', density=True)
ax.set_xlabel(f'P({class_name})')
ax.set_ylabel('Density')
ax.set_title(f'Predicted Probability: {class_name}', fontweight='bold')
ax.legend(fontsize=8)
plt.tight_layout()
plt.savefig(save_path, dpi=150, bbox_inches='tight')
plt.close()
print(f" Saved: {save_path}")
def main():
"""Main evaluation pipeline."""
print("\n" + "="*60)
print("MODEL EVALUATION")
print("="*60)
# Create figures directory
FIGURES_DIR.mkdir(parents=True, exist_ok=True)
# Load model and data
model, metadata, train_df, test_df = load_model_and_data()
feature_names = metadata['feature_names']
# Prepare data
X_test, y_test = prepare_data(test_df, feature_names)
X_train, y_train = prepare_data(train_df, feature_names)
# Make predictions
y_proba = model.predict(X_test)
y_pred = np.argmax(y_proba, axis=1)
# Compute metrics
metrics = compute_all_metrics(y_test, y_pred, y_proba)
print_metrics(metrics)
# Generate plots
plot_confusion_matrix(y_test, y_pred, FIGURES_DIR / 'confusion_matrix.png')
plot_classification_report(y_test, y_pred, FIGURES_DIR / 'classification_metrics.png')
plot_prediction_distribution(y_test, y_pred, y_proba, FIGURES_DIR / 'prediction_distribution.png')
# SHAP analysis
importance_df = plot_shap_importance(model, X_test, feature_names,
FIGURES_DIR / 'shap_importance.png')
# Error analysis
analyze_errors(test_df, y_test, y_pred, FIGURES_DIR / 'error_analysis.png')
# Save importance rankings
importance_df.to_csv(FIGURES_DIR / 'feature_importance.csv', index=False)
print("\n" + "="*60)
print("✓ Evaluation Complete!")
print(f" Figures saved to: {FIGURES_DIR}")
print("="*60 + "\n")
if __name__ == "__main__":
main()
|