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@@ -35,3 +35,18 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
 fid_vs_step.png filter=lfs diff=lfs merge=lfs -text
 image_mask_metric_trend_comparison.png filter=lfs diff=lfs merge=lfs -text
+3d_step_lpips_dice.png filter=lfs diff=lfs merge=lfs -text
+3d_step_lpips_iou.png filter=lfs diff=lfs merge=lfs -text
+3d_step_ssim_dice.png filter=lfs diff=lfs merge=lfs -text
+3d_step_ssim_iou.png filter=lfs diff=lfs merge=lfs -text
+normalized_metrics_vs_step_all.png filter=lfs diff=lfs merge=lfs -text
+normalized_metrics_vs_step_merge.png filter=lfs diff=lfs merge=lfs -text
+normalized_metrics_vs_step_scratch.png filter=lfs diff=lfs merge=lfs -text
+trajectory_dice_vs_fid.png filter=lfs diff=lfs merge=lfs -text
+trajectory_dice_vs_lpips.png filter=lfs diff=lfs merge=lfs -text
+trajectory_dice_vs_psnr.png filter=lfs diff=lfs merge=lfs -text
+trajectory_dice_vs_ssim.png filter=lfs diff=lfs merge=lfs -text
+trajectory_iou_vs_fid.png filter=lfs diff=lfs merge=lfs -text
+trajectory_iou_vs_lpips.png filter=lfs diff=lfs merge=lfs -text
+trajectory_iou_vs_psnr.png filter=lfs diff=lfs merge=lfs -text
+trajectory_iou_vs_ssim.png filter=lfs diff=lfs merge=lfs -text

candidate_checkpoints_topk.csv

@@ -0,0 +1,36 @@
+selection_metric,rank,run_name,checkpoint_name,step,output_dir,metric_value
+lpips,1,scratch,18000,18000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018000,0.1521263054682791
+lpips,2,scratch,21500,21500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0021500,0.1522938321863181
+lpips,3,scratch,15000,15000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0015000,0.1529689925007355
+lpips,4,scratch,17500,17500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0017500,0.1529893055218045
+lpips,5,scratch,21000,21000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0021000,0.1530884388552946
+fid,1,scratch,16000,16000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0016000,14.945377349853516
+fid,2,scratch,21500,21500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0021500,15.13054656982422
+fid,3,scratch,16500,16500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0016500,15.269416809082031
+fid,4,scratch,21000,21000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0021000,15.613462448120115
+fid,5,scratch,17500,17500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0017500,15.738938331604004
+ssim,1,scratch,18000,18000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018000,0.7065704324438046
+ssim,2,merge,7500,7500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0007500,0.7063473959534756
+ssim,3,scratch,15000,15000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0015000,0.7063156517802042
+ssim,4,merge,10000,10000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0010000,0.7061723660410125
+ssim,5,merge,12500,12500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0012500,0.7058339651176831
+psnr,1,merge,7500,7500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0007500,21.262978532043057
+psnr,2,merge,10000,10000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0010000,21.247593973410527
+psnr,3,scratch,18500,18500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018500,21.22035719426726
+psnr,4,scratch,15000,15000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0015000,21.218179214494707
+psnr,5,merge,12500,12500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0012500,21.20630104813805
+dice_macro_nonempty,1,merge,20500,20500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0020500,0.7503200498971636
+dice_macro_nonempty,2,scratch,19000,19000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0019000,0.7499042819629933
+dice_macro_nonempty,3,scratch,18500,18500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018500,0.7497256548424635
+dice_macro_nonempty,4,scratch,18000,18000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018000,0.7494076441756026
+dice_macro_nonempty,5,scratch,20500,20500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0020500,0.7484597419979883
+iou_macro_nonempty,1,scratch,19000,19000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0019000,0.6269236561454763
+iou_macro_nonempty,2,merge,20500,20500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0020500,0.6263017317338778
+iou_macro_nonempty,3,scratch,18000,18000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018000,0.6261755807899309
+iou_macro_nonempty,4,scratch,18500,18500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018500,0.6261496910961302
+iou_macro_nonempty,5,scratch,20500,20500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0020500,0.6253080116332426
+reference_score,1,scratch,18000,18000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018000,1.7000000000000002
+reference_score,2,scratch,21500,21500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0021500,3.1
+reference_score,3,merge,18000,18000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0018000,3.9
+reference_score,4,scratch,15000,15000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0015000,4.2
+reference_score,5,merge,12500,12500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0012500,5.200000000000001

candidate_checkpoints_topk.md

@@ -0,0 +1,39 @@
+# Candidate Checkpoints Top-K
+
+| selection_metric | rank | run_name | checkpoint_name | step | output_dir | metric_value |
+| --- | --- | --- | --- | --- | --- | --- |
+| lpips | 1 | scratch | 18000 | 18000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018000 | 0.1521263054682791 |
+| lpips | 2 | scratch | 21500 | 21500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0021500 | 0.1522938321863181 |
+| lpips | 3 | scratch | 15000 | 15000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0015000 | 0.1529689925007355 |
+| lpips | 4 | scratch | 17500 | 17500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0017500 | 0.1529893055218045 |
+| lpips | 5 | scratch | 21000 | 21000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0021000 | 0.1530884388552946 |
+| fid | 1 | scratch | 16000 | 16000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0016000 | 14.945377349853516 |
+| fid | 2 | scratch | 21500 | 21500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0021500 | 15.13054656982422 |
+| fid | 3 | scratch | 16500 | 16500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0016500 | 15.269416809082031 |
+| fid | 4 | scratch | 21000 | 21000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0021000 | 15.613462448120115 |
+| fid | 5 | scratch | 17500 | 17500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0017500 | 15.738938331604004 |
+| ssim | 1 | scratch | 18000 | 18000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018000 | 0.7065704324438046 |
+| ssim | 2 | merge | 7500 | 7500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0007500 | 0.7063473959534756 |
+| ssim | 3 | scratch | 15000 | 15000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0015000 | 0.7063156517802042 |
+| ssim | 4 | merge | 10000 | 10000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0010000 | 0.7061723660410125 |
+| ssim | 5 | merge | 12500 | 12500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0012500 | 0.7058339651176831 |
+| psnr | 1 | merge | 7500 | 7500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0007500 | 21.262978532043057 |
+| psnr | 2 | merge | 10000 | 10000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0010000 | 21.247593973410527 |
+| psnr | 3 | scratch | 18500 | 18500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018500 | 21.22035719426726 |
+| psnr | 4 | scratch | 15000 | 15000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0015000 | 21.218179214494707 |
+| psnr | 5 | merge | 12500 | 12500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0012500 | 21.20630104813805 |
+| dice_macro_nonempty | 1 | merge | 20500 | 20500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0020500 | 0.7503200498971636 |
+| dice_macro_nonempty | 2 | scratch | 19000 | 19000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0019000 | 0.7499042819629933 |
+| dice_macro_nonempty | 3 | scratch | 18500 | 18500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018500 | 0.7497256548424635 |
+| dice_macro_nonempty | 4 | scratch | 18000 | 18000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018000 | 0.7494076441756026 |
+| dice_macro_nonempty | 5 | scratch | 20500 | 20500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0020500 | 0.7484597419979883 |
+| iou_macro_nonempty | 1 | scratch | 19000 | 19000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0019000 | 0.6269236561454763 |
+| iou_macro_nonempty | 2 | merge | 20500 | 20500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0020500 | 0.6263017317338778 |
+| iou_macro_nonempty | 3 | scratch | 18000 | 18000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018000 | 0.6261755807899309 |
+| iou_macro_nonempty | 4 | scratch | 18500 | 18500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018500 | 0.6261496910961302 |
+| iou_macro_nonempty | 5 | scratch | 20500 | 20500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0020500 | 0.6253080116332426 |
+| reference_score | 1 | scratch | 18000 | 18000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0018000 | 1.7000000000000002 |
+| reference_score | 2 | scratch | 21500 | 21500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0021500 | 3.1 |
+| reference_score | 3 | merge | 18000 | 18000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0018000 | 3.9 |
+| reference_score | 4 | scratch | 15000 | 15000 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0015000 | 4.2 |
+| reference_score | 5 | merge | 12500 | 12500 | /apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/merge/ckpt_0012500 | 5.200000000000001 |

checkpoint_level_correlations.csv

@@ -0,0 +1,97 @@
+group,phase,image_metric,mask_metric,n,pearson,spearman
+all,all,ssim,dice_macro_nonempty,86,0.882637422959565,0.7819708476814945
+all,all,psnr,dice_macro_nonempty,86,0.8737808448786287,0.7658757488560781
+all,all,lpips,dice_macro_nonempty,86,-0.928510311420497,-0.9464691730742015
+all,all,fid,dice_macro_nonempty,86,-0.4653723115986228,-0.3053445917260248
+all,all,ssim,iou_macro_nonempty,86,0.8876012076270584,0.7805934242181235
+all,all,psnr,iou_macro_nonempty,86,0.8777972345055977,0.7628378697108353
+all,all,lpips,iou_macro_nonempty,86,-0.9341248860480855,-0.9508656068682485
+all,all,fid,iou_macro_nonempty,86,-0.47563373053836994,-0.3245719137695174
+merge,all,ssim,dice_macro_nonempty,43,0.8940566454502251,0.6082754454847478
+merge,all,psnr,dice_macro_nonempty,43,0.894850481530676,0.5678042887345213
+merge,all,lpips,dice_macro_nonempty,43,-0.9213789304421014,-0.9053156146179403
+merge,all,fid,dice_macro_nonempty,43,-0.7702039287987303,-0.6414980368468741
+merge,all,ssim,iou_macro_nonempty,43,0.9036430754252113,0.6122017517366354
+merge,all,psnr,iou_macro_nonempty,43,0.9032291309542065,0.5699184536393839
+merge,all,lpips,iou_macro_nonempty,43,-0.9334821402633201,-0.9030504379341588
+merge,all,fid,iou_macro_nonempty,43,-0.787588952929348,-0.6401389308366051
+scratch,all,ssim,dice_macro_nonempty,43,0.9855820514406826,0.9130172153427967
+scratch,all,psnr,dice_macro_nonempty,43,0.9869824898778453,0.9223799456357596
+scratch,all,lpips,dice_macro_nonempty,43,-0.9923234030124776,-0.9657203261854425
+scratch,all,fid,dice_macro_nonempty,43,-0.5624138931222182,-0.39066747206282093
+scratch,all,ssim,iou_macro_nonempty,43,0.985406370874135,0.9142253095741468
+scratch,all,psnr,iou_macro_nonempty,43,0.9858317476175769,0.9210208396254906
+scratch,all,lpips,iou_macro_nonempty,43,-0.990735244766196,-0.9675324675324676
+scratch,all,fid,iou_macro_nonempty,43,-0.5611702405949375,-0.39580187254605853
+all,early,ssim,dice_macro_nonempty,20,0.7053895215271159,0.8165413533834586
+all,early,psnr,dice_macro_nonempty,20,0.6972881105364346,0.8105263157894737
+all,early,lpips,dice_macro_nonempty,20,-0.7995220188494124,-0.9368421052631578
+all,early,fid,dice_macro_nonempty,20,-0.16219835824679035,-0.05413533834586466
+all,early,ssim,iou_macro_nonempty,20,0.7151884462149494,0.8165413533834586
+all,early,psnr,iou_macro_nonempty,20,0.7068991661961783,0.8105263157894737
+all,early,lpips,iou_macro_nonempty,20,-0.8101968955497013,-0.9368421052631578
+all,early,fid,iou_macro_nonempty,20,-0.16318468697745714,-0.05413533834586466
+all,late,ssim,dice_macro_nonempty,46,0.55745356188422,0.4440949737897009
+all,late,psnr,dice_macro_nonempty,46,0.4473107782479876,0.2784458834412581
+all,late,lpips,dice_macro_nonempty,46,-0.7642897144078562,-0.7190255935861856
+all,late,fid,dice_macro_nonempty,46,-0.15307007607746054,-0.14696268886833178
+all,late,ssim,iou_macro_nonempty,46,0.5497619671023835,0.4482886216466234
+all,late,psnr,iou_macro_nonempty,46,0.4356257497707564,0.2769657724329324
+all,late,lpips,iou_macro_nonempty,46,-0.7870064986987533,-0.7477644156645081
+all,late,fid,iou_macro_nonempty,46,-0.21874284489470364,-0.20826395312981807
+all,middle,ssim,dice_macro_nonempty,20,0.7325925187233677,0.5894736842105263
+all,middle,psnr,dice_macro_nonempty,20,0.7453801559206027,0.6721804511278194
+all,middle,lpips,dice_macro_nonempty,20,-0.8698825730148604,-0.8586466165413533
+all,middle,fid,dice_macro_nonempty,20,0.1427273932871479,0.10827067669172932
+all,middle,ssim,iou_macro_nonempty,20,0.7168643528782167,0.5729323308270676
+all,middle,psnr,iou_macro_nonempty,20,0.7256349174054844,0.6496240601503759
+all,middle,lpips,iou_macro_nonempty,20,-0.8670224269697973,-0.8616541353383457
+all,middle,fid,iou_macro_nonempty,20,0.10785158000916654,0.060150375939849614
+merge,early,ssim,dice_macro_nonempty,10,0.8321953525746382,0.9757575757575757
+merge,early,psnr,dice_macro_nonempty,10,0.872961468719339,0.9515151515151514
+merge,early,lpips,dice_macro_nonempty,10,-0.8575800219914457,-0.9999999999999999
+merge,early,fid,dice_macro_nonempty,10,-0.46986353149961196,-0.6969696969696969
+merge,early,ssim,iou_macro_nonempty,10,0.8419551375672303,0.9757575757575757
+merge,early,psnr,iou_macro_nonempty,10,0.8822240389671282,0.9515151515151514
+merge,early,lpips,iou_macro_nonempty,10,-0.8686346049358522,-0.9999999999999999
+merge,early,fid,iou_macro_nonempty,10,-0.47670416401567867,-0.6969696969696969
+merge,late,ssim,dice_macro_nonempty,23,0.03537052895004558,-0.03656126482213439
+merge,late,psnr,dice_macro_nonempty,23,-0.1802177183631578,-0.24802371541501977
+merge,late,lpips,dice_macro_nonempty,23,-0.6163454481082413,-0.5019762845849802
+merge,late,fid,dice_macro_nonempty,23,-0.014018196273416285,0.08498023715415019
+merge,late,ssim,iou_macro_nonempty,23,0.035709816185614765,-0.015810276679841896
+merge,late,psnr,iou_macro_nonempty,23,-0.18693652641335662,-0.2391304347826087
+merge,late,lpips,iou_macro_nonempty,23,-0.5989526644556981,-0.4911067193675889
+merge,late,fid,iou_macro_nonempty,23,-0.0007469159589271304,0.0909090909090909
+merge,middle,ssim,dice_macro_nonempty,10,0.6415737360521867,0.4666666666666666
+merge,middle,psnr,dice_macro_nonempty,10,0.7451247089290575,0.7333333333333332
+merge,middle,lpips,dice_macro_nonempty,10,-0.8543203598944972,-0.7939393939393938
+merge,middle,fid,dice_macro_nonempty,10,-0.08587614800684891,0.01818181818181818
+merge,middle,ssim,iou_macro_nonempty,10,0.6253866669097744,0.4666666666666666
+merge,middle,psnr,iou_macro_nonempty,10,0.7285928029053649,0.7333333333333332
+merge,middle,lpips,iou_macro_nonempty,10,-0.8410105371448375,-0.7939393939393938
+merge,middle,fid,iou_macro_nonempty,10,-0.07743520221271158,0.01818181818181818
+scratch,early,ssim,dice_macro_nonempty,10,0.9851651306993505,0.9878787878787878
+scratch,early,psnr,dice_macro_nonempty,10,0.9829941356005915,0.9757575757575757
+scratch,early,lpips,dice_macro_nonempty,10,-0.9905547977995439,-0.9757575757575757
+scratch,early,fid,dice_macro_nonempty,10,-0.7294854345544488,0.006060606060606061
+scratch,early,ssim,iou_macro_nonempty,10,0.9855838645946573,0.9878787878787878
+scratch,early,psnr,iou_macro_nonempty,10,0.9832441078385689,0.9757575757575757
+scratch,early,lpips,iou_macro_nonempty,10,-0.9907024919962587,-0.9757575757575757
+scratch,early,fid,iou_macro_nonempty,10,-0.7265196945174723,0.006060606060606061
+scratch,late,ssim,dice_macro_nonempty,23,0.7419992498415854,0.6956521739130435
+scratch,late,psnr,dice_macro_nonempty,23,0.7131394653207731,0.6383399209486166
+scratch,late,lpips,dice_macro_nonempty,23,-0.89181082092526,-0.8211462450592886
+scratch,late,fid,dice_macro_nonempty,23,-0.383210038779916,-0.3102766798418973
+scratch,late,ssim,iou_macro_nonempty,23,0.743055438126081,0.7025691699604744
+scratch,late,psnr,iou_macro_nonempty,23,0.7105261647528809,0.6294466403162056
+scratch,late,lpips,iou_macro_nonempty,23,-0.895181429448315,-0.83300395256917
+scratch,late,fid,iou_macro_nonempty,23,-0.3882842195124173,-0.3300395256916996
+scratch,middle,ssim,dice_macro_nonempty,10,0.8459739300114253,0.7454545454545454
+scratch,middle,psnr,dice_macro_nonempty,10,0.8495708960722442,0.8666666666666665
+scratch,middle,lpips,dice_macro_nonempty,10,-0.8750043646348142,-0.8424242424242423
+scratch,middle,fid,dice_macro_nonempty,10,0.05632703800534426,-0.0303030303030303
+scratch,middle,ssim,iou_macro_nonempty,10,0.8535280876108366,0.7454545454545454
+scratch,middle,psnr,iou_macro_nonempty,10,0.8610397972096809,0.8666666666666665
+scratch,middle,lpips,iou_macro_nonempty,10,-0.8848214382789201,-0.8424242424242423
+scratch,middle,fid,iou_macro_nonempty,10,0.03757949056589373,-0.0303030303030303

checkpoint_level_correlations.md

@@ -0,0 +1,100 @@
+# Checkpoint-Level Correlations
+
+| group | phase | image_metric | mask_metric | n | pearson | spearman |
+| --- | --- | --- | --- | --- | --- | --- |
+| all | all | ssim | dice_macro_nonempty | 86 | 0.882637422959565 | 0.7819708476814945 |
+| all | all | psnr | dice_macro_nonempty | 86 | 0.8737808448786287 | 0.7658757488560781 |
+| all | all | lpips | dice_macro_nonempty | 86 | -0.928510311420497 | -0.9464691730742015 |
+| all | all | fid | dice_macro_nonempty | 86 | -0.4653723115986228 | -0.3053445917260248 |
+| all | all | ssim | iou_macro_nonempty | 86 | 0.8876012076270584 | 0.7805934242181235 |
+| all | all | psnr | iou_macro_nonempty | 86 | 0.8777972345055977 | 0.7628378697108353 |
+| all | all | lpips | iou_macro_nonempty | 86 | -0.9341248860480855 | -0.9508656068682485 |
+| all | all | fid | iou_macro_nonempty | 86 | -0.47563373053836994 | -0.3245719137695174 |
+| merge | all | ssim | dice_macro_nonempty | 43 | 0.8940566454502251 | 0.6082754454847478 |
+| merge | all | psnr | dice_macro_nonempty | 43 | 0.894850481530676 | 0.5678042887345213 |
+| merge | all | lpips | dice_macro_nonempty | 43 | -0.9213789304421014 | -0.9053156146179403 |
+| merge | all | fid | dice_macro_nonempty | 43 | -0.7702039287987303 | -0.6414980368468741 |
+| merge | all | ssim | iou_macro_nonempty | 43 | 0.9036430754252113 | 0.6122017517366354 |
+| merge | all | psnr | iou_macro_nonempty | 43 | 0.9032291309542065 | 0.5699184536393839 |
+| merge | all | lpips | iou_macro_nonempty | 43 | -0.9334821402633201 | -0.9030504379341588 |
+| merge | all | fid | iou_macro_nonempty | 43 | -0.787588952929348 | -0.6401389308366051 |
+| scratch | all | ssim | dice_macro_nonempty | 43 | 0.9855820514406826 | 0.9130172153427967 |
+| scratch | all | psnr | dice_macro_nonempty | 43 | 0.9869824898778453 | 0.9223799456357596 |
+| scratch | all | lpips | dice_macro_nonempty | 43 | -0.9923234030124776 | -0.9657203261854425 |
+| scratch | all | fid | dice_macro_nonempty | 43 | -0.5624138931222182 | -0.39066747206282093 |
+| scratch | all | ssim | iou_macro_nonempty | 43 | 0.985406370874135 | 0.9142253095741468 |
+| scratch | all | psnr | iou_macro_nonempty | 43 | 0.9858317476175769 | 0.9210208396254906 |
+| scratch | all | lpips | iou_macro_nonempty | 43 | -0.990735244766196 | -0.9675324675324676 |
+| scratch | all | fid | iou_macro_nonempty | 43 | -0.5611702405949375 | -0.39580187254605853 |
+| all | early | ssim | dice_macro_nonempty | 20 | 0.7053895215271159 | 0.8165413533834586 |
+| all | early | psnr | dice_macro_nonempty | 20 | 0.6972881105364346 | 0.8105263157894737 |
+| all | early | lpips | dice_macro_nonempty | 20 | -0.7995220188494124 | -0.9368421052631578 |
+| all | early | fid | dice_macro_nonempty | 20 | -0.16219835824679035 | -0.05413533834586466 |
+| all | early | ssim | iou_macro_nonempty | 20 | 0.7151884462149494 | 0.8165413533834586 |
+| all | early | psnr | iou_macro_nonempty | 20 | 0.7068991661961783 | 0.8105263157894737 |
+| all | early | lpips | iou_macro_nonempty | 20 | -0.8101968955497013 | -0.9368421052631578 |
+| all | early | fid | iou_macro_nonempty | 20 | -0.16318468697745714 | -0.05413533834586466 |
+| all | late | ssim | dice_macro_nonempty | 46 | 0.55745356188422 | 0.4440949737897009 |
+| all | late | psnr | dice_macro_nonempty | 46 | 0.4473107782479876 | 0.2784458834412581 |
+| all | late | lpips | dice_macro_nonempty | 46 | -0.7642897144078562 | -0.7190255935861856 |
+| all | late | fid | dice_macro_nonempty | 46 | -0.15307007607746054 | -0.14696268886833178 |
+| all | late | ssim | iou_macro_nonempty | 46 | 0.5497619671023835 | 0.4482886216466234 |
+| all | late | psnr | iou_macro_nonempty | 46 | 0.4356257497707564 | 0.2769657724329324 |
+| all | late | lpips | iou_macro_nonempty | 46 | -0.7870064986987533 | -0.7477644156645081 |
+| all | late | fid | iou_macro_nonempty | 46 | -0.21874284489470364 | -0.20826395312981807 |
+| all | middle | ssim | dice_macro_nonempty | 20 | 0.7325925187233677 | 0.5894736842105263 |
+| all | middle | psnr | dice_macro_nonempty | 20 | 0.7453801559206027 | 0.6721804511278194 |
+| all | middle | lpips | dice_macro_nonempty | 20 | -0.8698825730148604 | -0.8586466165413533 |
+| all | middle | fid | dice_macro_nonempty | 20 | 0.1427273932871479 | 0.10827067669172932 |
+| all | middle | ssim | iou_macro_nonempty | 20 | 0.7168643528782167 | 0.5729323308270676 |
+| all | middle | psnr | iou_macro_nonempty | 20 | 0.7256349174054844 | 0.6496240601503759 |
+| all | middle | lpips | iou_macro_nonempty | 20 | -0.8670224269697973 | -0.8616541353383457 |
+| all | middle | fid | iou_macro_nonempty | 20 | 0.10785158000916654 | 0.060150375939849614 |
+| merge | early | ssim | dice_macro_nonempty | 10 | 0.8321953525746382 | 0.9757575757575757 |
+| merge | early | psnr | dice_macro_nonempty | 10 | 0.872961468719339 | 0.9515151515151514 |
+| merge | early | lpips | dice_macro_nonempty | 10 | -0.8575800219914457 | -0.9999999999999999 |
+| merge | early | fid | dice_macro_nonempty | 10 | -0.46986353149961196 | -0.6969696969696969 |
+| merge | early | ssim | iou_macro_nonempty | 10 | 0.8419551375672303 | 0.9757575757575757 |
+| merge | early | psnr | iou_macro_nonempty | 10 | 0.8822240389671282 | 0.9515151515151514 |
+| merge | early | lpips | iou_macro_nonempty | 10 | -0.8686346049358522 | -0.9999999999999999 |
+| merge | early | fid | iou_macro_nonempty | 10 | -0.47670416401567867 | -0.6969696969696969 |
+| merge | late | ssim | dice_macro_nonempty | 23 | 0.03537052895004558 | -0.03656126482213439 |
+| merge | late | psnr | dice_macro_nonempty | 23 | -0.1802177183631578 | -0.24802371541501977 |
+| merge | late | lpips | dice_macro_nonempty | 23 | -0.6163454481082413 | -0.5019762845849802 |
+| merge | late | fid | dice_macro_nonempty | 23 | -0.014018196273416285 | 0.08498023715415019 |
+| merge | late | ssim | iou_macro_nonempty | 23 | 0.035709816185614765 | -0.015810276679841896 |
+| merge | late | psnr | iou_macro_nonempty | 23 | -0.18693652641335662 | -0.2391304347826087 |
+| merge | late | lpips | iou_macro_nonempty | 23 | -0.5989526644556981 | -0.4911067193675889 |
+| merge | late | fid | iou_macro_nonempty | 23 | -0.0007469159589271304 | 0.0909090909090909 |
+| merge | middle | ssim | dice_macro_nonempty | 10 | 0.6415737360521867 | 0.4666666666666666 |
+| merge | middle | psnr | dice_macro_nonempty | 10 | 0.7451247089290575 | 0.7333333333333332 |
+| merge | middle | lpips | dice_macro_nonempty | 10 | -0.8543203598944972 | -0.7939393939393938 |
+| merge | middle | fid | dice_macro_nonempty | 10 | -0.08587614800684891 | 0.01818181818181818 |
+| merge | middle | ssim | iou_macro_nonempty | 10 | 0.6253866669097744 | 0.4666666666666666 |
+| merge | middle | psnr | iou_macro_nonempty | 10 | 0.7285928029053649 | 0.7333333333333332 |
+| merge | middle | lpips | iou_macro_nonempty | 10 | -0.8410105371448375 | -0.7939393939393938 |
+| merge | middle | fid | iou_macro_nonempty | 10 | -0.07743520221271158 | 0.01818181818181818 |
+| scratch | early | ssim | dice_macro_nonempty | 10 | 0.9851651306993505 | 0.9878787878787878 |
+| scratch | early | psnr | dice_macro_nonempty | 10 | 0.9829941356005915 | 0.9757575757575757 |
+| scratch | early | lpips | dice_macro_nonempty | 10 | -0.9905547977995439 | -0.9757575757575757 |
+| scratch | early | fid | dice_macro_nonempty | 10 | -0.7294854345544488 | 0.006060606060606061 |
+| scratch | early | ssim | iou_macro_nonempty | 10 | 0.9855838645946573 | 0.9878787878787878 |
+| scratch | early | psnr | iou_macro_nonempty | 10 | 0.9832441078385689 | 0.9757575757575757 |
+| scratch | early | lpips | iou_macro_nonempty | 10 | -0.9907024919962587 | -0.9757575757575757 |
+| scratch | early | fid | iou_macro_nonempty | 10 | -0.7265196945174723 | 0.006060606060606061 |
+| scratch | late | ssim | dice_macro_nonempty | 23 | 0.7419992498415854 | 0.6956521739130435 |
+| scratch | late | psnr | dice_macro_nonempty | 23 | 0.7131394653207731 | 0.6383399209486166 |
+| scratch | late | lpips | dice_macro_nonempty | 23 | -0.89181082092526 | -0.8211462450592886 |
+| scratch | late | fid | dice_macro_nonempty | 23 | -0.383210038779916 | -0.3102766798418973 |
+| scratch | late | ssim | iou_macro_nonempty | 23 | 0.743055438126081 | 0.7025691699604744 |
+| scratch | late | psnr | iou_macro_nonempty | 23 | 0.7105261647528809 | 0.6294466403162056 |
+| scratch | late | lpips | iou_macro_nonempty | 23 | -0.895181429448315 | -0.83300395256917 |
+| scratch | late | fid | iou_macro_nonempty | 23 | -0.3882842195124173 | -0.3300395256916996 |
+| scratch | middle | ssim | dice_macro_nonempty | 10 | 0.8459739300114253 | 0.7454545454545454 |
+| scratch | middle | psnr | dice_macro_nonempty | 10 | 0.8495708960722442 | 0.8666666666666665 |
+| scratch | middle | lpips | dice_macro_nonempty | 10 | -0.8750043646348142 | -0.8424242424242423 |
+| scratch | middle | fid | dice_macro_nonempty | 10 | 0.05632703800534426 | -0.0303030303030303 |
+| scratch | middle | ssim | iou_macro_nonempty | 10 | 0.8535280876108366 | 0.7454545454545454 |
+| scratch | middle | psnr | iou_macro_nonempty | 10 | 0.8610397972096809 | 0.8666666666666665 |
+| scratch | middle | lpips | iou_macro_nonempty | 10 | -0.8848214382789201 | -0.8424242424242423 |
+| scratch | middle | fid | iou_macro_nonempty | 10 | 0.03757949056589373 | -0.0303030303030303 |

normalized_sweep_metrics.csv

@@ -0,0 +1,87 @@
+run_name,checkpoint_name,step,output_dir,ssim_norm_better,psnr_norm_better,dice_macro_nonempty_norm_better,iou_macro_nonempty_norm_better,lpips_norm_better,fid_norm_better
+scratch,500,500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0000500,0.0,0.0,0.09206399888111846,0.06579753819467352,0.0,0.2534836950288444
+scratch,1000,1000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0001000,0.3234629621215207,0.3205429867072661,0.39851694354348755,0.3704682352896313,0.3663360774476345,0.8202507115930309
+scratch,1500,1500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0001500,0.3836491130332075,0.400973246370287,0.50683507064723,0.47768217951826863,0.43618743350203515,0.6252777520064501
+scratch,2000,2000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0002000,0.451036037356182,0.42453695579459355,0.590349645742787,0.5667404598969039,0.5065786742755497,0.7944870138076686
+scratch,2500,2500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0002500,0.5740454646613748,0.5671232318981009,0.6363289465807921,0.6093446240530895,0.6170286886997605,0.8006541128238696
+scratch,3000,3000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0003000,0.5077370020152194,0.5466495618777679,0.6623241624575905,0.6362623789362579,0.5716676275601674,0.7970277826276575
+scratch,3500,3500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0003500,0.6625869012234237,0.6879928028960358,0.7111130579703813,0.6857016528512225,0.7090385353056528,0.7759779244835974
+scratch,4000,4000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0004000,0.6712774263906431,0.6572740930119725,0.7537637506631046,0.7289276147149947,0.694097740725337,0.7342960689674821
+scratch,4500,4500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0004500,0.7326547217558692,0.7446484716572974,0.7733456865866597,0.7508596381990281,0.7677573519739587,0.6616613472211164
+scratch,5000,5000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0005000,0.7608842759479518,0.7777866544655769,0.7982233653716598,0.776772776777704,0.809978831330377,0.7790144768302777
+scratch,5500,5500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0005500,0.7685496134916159,0.7940468607227275,0.8123524024963779,0.7899854158992319,0.8228651136844582,0.8305934962259818
+scratch,6000,6000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0006000,0.7923571373097009,0.8238707956196083,0.8129694088870331,0.7916626502148231,0.8533868359803939,0.7316888222974014
+scratch,6500,6500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0006500,0.9340767882302603,0.8967415146846788,0.8508985636361943,0.8333310452314866,0.9175924900424994,0.8016965731764066
+scratch,7000,7000,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0007000,0.8329840295009029,0.8239226435511742,0.8652098896314995,0.8447184230755505,0.8602105908149346,0.6573344427585532
+scratch,7500,7500,/apdcephfs_zwfy2/share_303944931/connorxian/Code/medUni/wt/zr/gen_joint/outputs_ckp_sweep/scratch/ckpt_0007500,0.8904983830853241,0.8782012097432536,0.8766559438934751,0.861104441472828,0.8990472841384533,0.7545766834176239
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supplementary_sweep_analysis_report.md

@@ -0,0 +1,42 @@
+# Supplementary Sweep Analysis Report
+
+- checkpoints loaded: 86
+- completed checkpoints used: 86
+- failed/incomplete checkpoints dropped: 0
+
+## Interpretation Template
+
+- Image and mask metrics can co-evolve over checkpoint training.
+- Early/middle/late correlations may weaken in late stages due to saturation.
+- Scratch and merge can show different convergence dynamics.
+
+## Generated Outputs
+- `normalized_sweep_metrics.csv`
+- `normalized_metrics_vs_step_all.png`
+- `normalized_metrics_vs_step_scratch.png`
+- `normalized_metrics_vs_step_merge.png`
+- `trajectory_dice_vs_lpips.png`
+- `trajectory_dice_vs_ssim.png`
+- `trajectory_iou_vs_lpips.png`
+- `trajectory_iou_vs_ssim.png`
+- `trajectory_dice_vs_psnr.png`
+- `trajectory_iou_vs_psnr.png`
+- `trajectory_dice_vs_fid.png`
+- `trajectory_iou_vs_fid.png`
+- `checkpoint_level_correlations.csv`
+- `checkpoint_level_correlations.md`
+- `residual_metrics.csv`
+- `residual_correlations.csv`
+- `residual_dice_vs_lpips.png`
+- `residual_dice_vs_ssim.png`
+- `residual_iou_vs_lpips.png`
+- `residual_iou_vs_ssim.png`
+- `3d_step_ssim_dice.png`
+- `3d_step_lpips_dice.png`
+- `3d_step_ssim_iou.png`
+- `3d_step_lpips_iou.png`
+- `candidate_checkpoints_topk.csv`
+- `candidate_checkpoints_topk.md`
+
+## Notes and Limitations
+- Checkpoint-level correlation is not sample-level correlation and may be confounded by training step.