import numpy as np import torch if __name__ != "__main__": from .konia_transform import ( angle_axis_to_quaternion, angle_axis_to_rotation_matrix, quaternion_to_angle_axis, quaternion_to_rotation_matrix, rotation_matrix_to_angle_axis, rotation_matrix_to_quaternion, ) else: from konia_transform import ( angle_axis_to_quaternion, angle_axis_to_rotation_matrix, quaternion_to_rotation_matrix, rotation_matrix_to_angle_axis, rotation_matrix_to_quaternion, ) def normalize(x, eps: float = 1e-9): return x / x.norm(p=2, dim=-1).clamp(min=eps, max=None).unsqueeze(-1) @torch.jit.script def quat_mul(a, b): assert a.shape == b.shape shape = a.shape a = a.reshape(-1, 4) b = b.reshape(-1, 4) w1, x1, y1, z1 = a[:, 0], a[:, 1], a[:, 2], a[:, 3] w2, x2, y2, z2 = b[:, 0], b[:, 1], b[:, 2], b[:, 3] ww = (z1 + x1) * (x2 + y2) yy = (w1 - y1) * (w2 + z2) zz = (w1 + y1) * (w2 - z2) xx = ww + yy + zz qq = 0.5 * (xx + (z1 - x1) * (x2 - y2)) w = qq - ww + (z1 - y1) * (y2 - z2) x = qq - xx + (x1 + w1) * (x2 + w2) y = qq - yy + (w1 - x1) * (y2 + z2) z = qq - zz + (z1 + y1) * (w2 - x2) return torch.stack([w, x, y, z], dim=-1).view(shape) @torch.jit.script def quat_conjugate(a): shape = a.shape a = a.reshape(-1, 4) return torch.cat((a[:, 0:1], -a[:, 1:]), dim=-1).view(shape) @torch.jit.script def quat_apply(a, b): shape = b.shape a = a.reshape(-1, 4) b = b.reshape(-1, 3) xyz = a[:, 1:].clone() t = xyz.cross(b, dim=-1) * 2 return (b + a[:, 0:1].clone() * t + xyz.cross(t, dim=-1)).view(shape) @torch.jit.script def quat_angle(a, eps: float = 1e-6): shape = a.shape a = a.reshape(-1, 4) s = 2 * (a[:, 0] ** 2) - 1 s = s.clamp(-1 + eps, 1 - eps) s = s.acos() return s.view(shape[:-1]) @torch.jit.script def quat_angle_diff(quat1, quat2): return quat_angle(quat_mul(quat1, quat_conjugate(quat2))) @torch.jit.script def torch_safe_atan2(y, x, eps: float = 1e-8): y = y.clone() y[(y.abs() < eps) & (x.abs() < eps)] += eps return torch.atan2(y, x) @torch.jit.script def ypr_euler_from_quat( q, handle_singularity: bool = False, eps: float = 1e-6, singular_eps: float = 1e-6 ): """ convert quaternion to yaw-pitch-roll euler angles """ yaw_atany = 2 * (q[..., 0] * q[..., 3] + q[..., 1] * q[..., 2]) yaw_atanx = 1 - 2 * (q[..., 2] * q[..., 2] + q[..., 3] * q[..., 3]) roll_atany = 2 * (q[..., 0] * q[..., 1] + q[..., 2] * q[..., 3]) roll_atanx = 1 - 2 * (q[..., 1] * q[..., 1] + q[..., 2] * q[..., 2]) yaw = torch_safe_atan2(yaw_atany, yaw_atanx, eps) pitch = torch.asin( torch.clamp( 2 * (q[..., 0] * q[..., 2] - q[..., 1] * q[..., 3]), min=-1 + eps, max=1 - eps, ) ) roll = torch_safe_atan2(roll_atany, roll_atanx, eps) if handle_singularity: """ handle two special cases """ test = q[..., 0] * q[..., 2] - q[..., 1] * q[..., 3] # north pole, pitch ~= 90 degrees np_ind = test > 0.5 - singular_eps if torch.any(np_ind): # print('ypr_euler_from_quat singularity -- north pole!') roll[np_ind] = 0.0 pitch[np_ind].clamp_max_(0.5 * np.pi) yaw_atany = q[..., 3][np_ind] yaw_atanx = q[..., 0][np_ind] yaw[np_ind] = 2 * torch_safe_atan2(yaw_atany, yaw_atanx, eps) # south pole, pitch ~= -90 degrees sp_ind = test < -0.5 + singular_eps if torch.any(sp_ind): # print('ypr_euler_from_quat singularity -- south pole!') roll[sp_ind] = 0.0 pitch[sp_ind].clamp_min_(-0.5 * np.pi) yaw_atany = q[..., 3][sp_ind] yaw_atanx = q[..., 0][sp_ind] yaw[sp_ind] = 2 * torch_safe_atan2(yaw_atany, yaw_atanx, eps) return torch.stack([roll, pitch, yaw], dim=-1) @torch.jit.script def quat_from_ypr_euler(angles): """ convert yaw-pitch-roll euler angles to quaternion """ half_ang = angles * 0.5 sin = torch.sin(half_ang) cos = torch.cos(half_ang) q = torch.stack( [ cos[..., 0] * cos[..., 1] * cos[..., 2] + sin[..., 0] * sin[..., 1] * sin[..., 2], sin[..., 0] * cos[..., 1] * cos[..., 2] - cos[..., 0] * sin[..., 1] * sin[..., 2], cos[..., 0] * sin[..., 1] * cos[..., 2] + sin[..., 0] * cos[..., 1] * sin[..., 2], cos[..., 0] * cos[..., 1] * sin[..., 2] - sin[..., 0] * sin[..., 1] * cos[..., 2], ], dim=-1, ) return q def quat_between_two_vec(v1, v2, eps: float = 1e-6): """ quaternion for rotating v1 to v2 """ orig_shape = v1.shape v1 = v1.reshape(-1, 3) v2 = v2.reshape(-1, 3) dot = (v1 * v2).sum(-1) cross = torch.cross(v1, v2, dim=-1) out = torch.cat([(1 + dot).unsqueeze(-1), cross], dim=-1) # handle v1 & v2 with same direction sind = dot > 1 - eps out[sind] = torch.tensor([1.0, 0.0, 0.0, 0.0], device=v1.device) # handle v1 & v2 with opposite direction nind = dot < -1 + eps if torch.any(nind): vx = torch.tensor([1.0, 0.0, 0.0], device=v1.device) vxdot = (v1 * vx).sum(-1).abs() nxind = nind & (vxdot < 1 - eps) if torch.any(nxind): out[nxind] = angle_axis_to_quaternion( normalize(torch.cross(vx.expand_as(v1[nxind]), v1[nxind], dim=-1)) * np.pi ) # handle v1 & v2 with opposite direction and they are parallel to x axis pind = nind & (vxdot >= 1 - eps) if torch.any(pind): vy = torch.tensor([0.0, 1.0, 0.0], device=v1.device) out[pind] = angle_axis_to_quaternion( normalize(torch.cross(vy.expand_as(v1[pind]), v1[pind], dim=-1)) * np.pi ) # normalize and reshape out = normalize(out).view(orig_shape[:-1] + (4,)) return out @torch.jit.script def get_yaw(q, eps: float = 1e-6): yaw_atany = 2 * (q[..., 0] * q[..., 3] + q[..., 1] * q[..., 2]) yaw_atanx = 1 - 2 * (q[..., 2] * q[..., 2] + q[..., 3] * q[..., 3]) yaw = torch_safe_atan2(yaw_atany, yaw_atanx, eps) return yaw @torch.jit.script def get_yaw_q(q): yaw = get_yaw(q) angle_axis = torch.cat( [torch.zeros(yaw.shape + (2,), device=q.device), yaw.unsqueeze(-1)], dim=-1 ) heading_q = angle_axis_to_quaternion(angle_axis) return heading_q @torch.jit.script def get_heading(q, eps: float = 1e-6): heading_atany = q[..., 3] heading_atanx = q[..., 0] heading = 2 * torch_safe_atan2(heading_atany, heading_atanx, eps) return heading def get_heading_q(q): q_new = q.clone() q_new[..., 1] = 0 q_new[..., 2] = 0 q_new = normalize(q_new) return q_new def get_y_heading_q(q): q_new = q.clone() q_new[..., 1] = 0 q_new[..., 3] = 0 q_new = normalize(q_new) return q_new @torch.jit.script def heading_to_vec(h_theta): v = torch.stack([torch.cos(h_theta), torch.sin(h_theta)], dim=-1) return v @torch.jit.script def vec_to_heading(h_vec): h_theta = torch_safe_atan2(h_vec[..., 1], h_vec[..., 0]) return h_theta @torch.jit.script def heading_to_quat(h_theta): angle_axis = torch.cat( [ torch.zeros(h_theta.shape + (2,), device=h_theta.device), h_theta.unsqueeze(-1), ], dim=-1, ) heading_q = angle_axis_to_quaternion(angle_axis) return heading_q def deheading_quat(q, heading_q=None): if heading_q is None: heading_q = get_heading_q(q) dq = quat_mul(quat_conjugate(heading_q), q) return dq @torch.jit.script def rotmat_to_rot6d(mat): rot6d = torch.cat([mat[..., 0], mat[..., 1]], dim=-1) return rot6d @torch.jit.script def rot6d_to_rotmat(rot6d, eps: float = 1e-8): a1 = rot6d[..., :3].clone() a2 = rot6d[..., 3:].clone() ind = torch.norm(a1, dim=-1) < eps a1[ind] = torch.tensor([1.0, 0.0, 0.0], device=a1.device) b1 = normalize(a1) b2 = normalize(a2 - (b1 * a2).sum(dim=-1).unsqueeze(-1) * b1) ind = torch.norm(b2, dim=-1) < eps b2[ind] = torch.tensor([0.0, 1.0, 0.0], device=b2.device) b3 = torch.cross(b1, b2, dim=-1) mat = torch.stack([b1, b2, b3], dim=-1) return mat @torch.jit.script def angle_axis_to_rot6d(aa): return rotmat_to_rot6d(angle_axis_to_rotation_matrix(aa)) @torch.jit.script def rot6d_to_angle_axis(rot6d): return rotation_matrix_to_angle_axis(rot6d_to_rotmat(rot6d)) @torch.jit.script def quat_to_rot6d(q): return rotmat_to_rot6d(quaternion_to_rotation_matrix(q)) @torch.jit.script def rot6d_to_quat(rot6d): return rotation_matrix_to_quaternion(rot6d_to_rotmat(rot6d)) @torch.jit.script def make_transform(rot, trans, rot_type: str = "rotmat"): if rot_type == "axis_angle": rot = angle_axis_to_rotation_matrix(rot) elif rot_type == "6d": rot = rot6d_to_rotmat(rot) transform = torch.eye(4).to(trans.device).repeat(rot.shape[:-2] + (1, 1)) transform[..., :3, :3] = rot transform[..., :3, 3] = trans return transform @torch.jit.script def transform_trans(transform_mat, trans): trans = torch.cat((trans, torch.ones_like(trans[..., :1])), dim=-1)[..., None, :] while len(transform_mat.shape) < len(trans.shape): transform_mat = transform_mat.unsqueeze(-3) trans_new = torch.matmul(trans, transform_mat.transpose(-2, -1))[..., 0, :3] return trans_new @torch.jit.script def transform_rot(transform_mat, rot): rot_qmat = angle_axis_to_rotation_matrix(rot) while len(transform_mat.shape) < len(rot_qmat.shape): transform_mat = transform_mat.unsqueeze(-3) rot_qmat_new = torch.matmul(transform_mat[..., :3, :3], rot_qmat) rot_new = rotation_matrix_to_angle_axis(rot_qmat_new) return rot_new @torch.jit.script def inverse_transform(transform_mat): transform_inv = torch.zeros_like(transform_mat) transform_inv[..., :3, :3] = transform_mat[..., :3, :3].transpose(-2, -1) transform_inv[..., :3, 3] = -torch.matmul( transform_mat[..., :3, 3].unsqueeze(-2), transform_mat[..., :3, :3] ).squeeze(-2) transform_inv[..., 3, 3] = 1.0 return transform_inv def batch_compute_similarity_transform_torch(S1, S2): """ Computes a similarity transform (sR, t) that takes a set of 3D points S1 (3 x N) closest to a set of 3D points S2, where R is an 3x3 rotation matrix, t 3x1 translation, s scale. i.e. solves the orthogonal Procrutes problem. """ if len(S1.shape) > 3: orig_shape = S1.shape S1 = S1.reshape(-1, *S1.shape[-2:]) S2 = S2.reshape(-1, *S2.shape[-2:]) else: orig_shape = None transposed = False if S1.shape[0] != 3 and S1.shape[0] != 2: S1 = S1.permute(0, 2, 1) S2 = S2.permute(0, 2, 1) transposed = True assert S2.shape[1] == S1.shape[1] # 1. Remove mean. mu1 = S1.mean(axis=-1, keepdims=True) mu2 = S2.mean(axis=-1, keepdims=True) X1 = S1 - mu1 X2 = S2 - mu2 # 2. Compute variance of X1 used for scale. var1 = torch.sum(X1**2, dim=1).sum(dim=1) # 3. The outer product of X1 and X2. K = X1.bmm(X2.permute(0, 2, 1)) # 4. Solution that Maximizes trace(R'K) is R=U*V', where U, V are # singular vectors of K. U, s, V = torch.svd(K) # Construct Z that fixes the orientation of R to get det(R)=1. Z = torch.eye(U.shape[1], device=S1.device).unsqueeze(0) Z = Z.repeat(U.shape[0], 1, 1) Z[:, -1, -1] *= torch.sign(torch.det(U.bmm(V.permute(0, 2, 1)))) # Construct R. R = V.bmm(Z.bmm(U.permute(0, 2, 1))) # 5. Recover scale. scale = torch.cat([torch.trace(x).unsqueeze(0) for x in R.bmm(K)]) / var1 # 6. Recover translation. t = mu2 - (scale.unsqueeze(-1).unsqueeze(-1) * (R.bmm(mu1))) # 7. Error: S1_hat = scale.unsqueeze(-1).unsqueeze(-1) * R.bmm(S1) + t if transposed: S1_hat = S1_hat.permute(0, 2, 1) if orig_shape is not None: S1_hat = S1_hat.reshape(orig_shape) return S1_hat