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# PDB 3Di Chains Dataset
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This repository contains chain-level sequences and 3Di tokens derived from RCSB PDB structures, with per-chain polymer class labels (`prot`, `DNA`, `RNA`, `other`). Files are chunked/merged from 1k-folders and cleaned for consistent CSV schema.
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## Files
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3di_chains_chaintag_all.csv
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474 MB
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13 minutes ago
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3di_chains_chaintag_prot_only.csv
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464 MB
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13 minutes ago
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3di_chains_chaintag_raw.csv
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482 MB
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13 minutes ago
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3di_chains_chaintag_sample_1000.csv
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- `_all` contains **all chains** (including **D-amino**, **RNA**, **DNA**, and any others).
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- `_prot_only` contains **protein chains only** (L- and D-amino acids treated as protein).
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- `_raw` is the merged, minimally-processed export prior to minor repairs (e.g., malformed lines).
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- `_sample_1000` is a 1,000-row random sample for quick inspection.
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## Schema
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# PDB 3Di Chains Dataset
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This repository contains chain-level sequences and 3Di tokens derived from RCSB PDB structures, with per-chain polymer class labels (`prot`, `DNA`, `RNA`, `other`). Files are chunked/merged from 1k-folders and cleaned for consistent CSV schema.
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Current data based on only 120K proteins.
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## Files
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3di_chains_chaintag_all.csv
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474 MB
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3di_chains_chaintag_prot_only.csv
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464 MB
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3di_chains_chaintag_sample_1000.csv
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- `_all` contains **all chains** (including **D-amino**, **RNA**, **DNA**, and any others).
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- `_prot_only` contains **protein chains only** (L- and D-amino acids treated as protein).
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- `_sample_1000` is a 1,000-row random sample for quick inspection.
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## Schema
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