Amelie Schreiber

AmelieSchreiber

AI & ML interests

Diffusion and flow matching models for proteins, small molecules, DNA, and RNA, protein language models, machine translation, equivariant attention mechanisms, LoRA, and QLoRA.

Recent Activity

updated a dataset 7 days ago

AmelieSchreiber/toricblm_fot

published a dataset 7 days ago

AmelieSchreiber/toricblm_fot

updated a dataset 7 days ago

AmelieSchreiber/uniprot_fot

View all activity

Organizations

published an article 11 days ago

Article

ToricBLM: Thought Alcoves, Tropical Attention, and Small Models With Serious Geometry

AmelieSchreiber

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11 days ago

published an article 15 days ago

Article

TropicalGT and ToricGT: Tropical, Toric, and Graph-Token Geometry for Auditable Reasoning

AmelieSchreiber

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15 days ago

• 1

published an article 21 days ago

Article

ToricGT: A Five-Paper Program for Algebraic, Geometric, and Graph-Structured Reasoning Agents

AmelieSchreiber

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21 days ago

published an article about 1 month ago

Article

ToricGT: noncommutative torus memory for graph-token reasoning

AmelieSchreiber

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May 26

• 1

published an article 3 months ago

Article

Tropical Quivers for Modern AI: A Guided Tour of a Research Program

AmelieSchreiber

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Mar 22

• 3

published an article 3 months ago

Article

Surface Orders, Cyclic Time, and a Concrete Hilbert–Pólya Framework

AmelieSchreiber

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Mar 17

• 1

published an article 4 months ago

Article

ThermoGFN-IF for Catalysis: A Protein Sequence Design Model Tuned with GFlowNets for Stable Protein Design and Kinetic-Aware Enzyme Engineering

AmelieSchreiber

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Mar 10

• 4

published an article over 1 year ago

Article

A New Era in Multistep Enzyme Design

AmelieSchreiber

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Oct 16, 2024

• 10

published an article almost 2 years ago

Article

A Guide to Designing New Functional Proteins and Improving Protein Function, Stability, and Diversity with Generative AI

AmelieSchreiber

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Jul 2, 2024

• 47

published an article about 2 years ago

Article

RFDiffusion Potentials

AmelieSchreiber

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May 14, 2024

• 26

published an article over 2 years ago

Article

Predicting the Effects of Mutations on Protein Function with ESM-2

AmelieSchreiber

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Dec 13, 2023

• 28

published an article over 2 years ago

Article

Faster Persistent Homology Alignment and Protein Complex Clustering with ESM-2 and Persistence Landscapes

AmelieSchreiber

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Nov 30, 2023

• 1

published an article over 2 years ago

Article

Clustering Protein Complexes using Persistent Homology and Finetuning ESM-2 for PPI Network Prediction

AmelieSchreiber

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Nov 29, 2023

• 2

published an article over 2 years ago

Article

ESM-2 for Generating and Optimizing Peptide Binders for Target Proteins

AmelieSchreiber

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Nov 23, 2023

• 6

published an article over 2 years ago

Article

Persistent Homology Alignment (PHA): Replacing Multiple Sequence Alignments using ESM-2 and Persistent Homology

AmelieSchreiber

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Nov 15, 2023

published an article over 2 years ago

Article

In Silico Directed Evolution of Protein Sequences with ESM-2 and EvoProtGrad

AmelieSchreiber

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Nov 13, 2023

• 2

published an article over 2 years ago

Article

QLoRA for ESM-2 and Post Translational Modification Site Prediction

AmelieSchreiber

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Nov 11, 2023

• 4

published an article over 2 years ago

Article

Estimating the Intrinsic Dimension of Protein Sequence Embeddings using ESM-2

AmelieSchreiber

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Oct 18, 2023

• 3

published an article over 2 years ago

Article

Predicting Protein-Protein Interactions Using a Protein Language Model and Linear Sum Assignment

AmelieSchreiber

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Oct 15, 2023

• 12

published an article almost 3 years ago

Article

ESMBind (ESMB) Ensemble Models

AmelieSchreiber

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Sep 22, 2023

• 5

Amelie Schreiber

AI & ML interests

Recent Activity

Organizations