AmelieSchreiber/codex_swebenchpro_traces-bucket
219 MB
Amelie Schreiber
AmelieSchreiber
AI & ML interests
Diffusion and flow matching models for proteins, small molecules, DNA, and RNA, protein language models, machine translation, equivariant attention mechanisms, LoRA, and QLoRA.
Recent Activity
updated a dataset 2 days ago
AmelieSchreiber/toricblm_fot published a dataset 2 days ago
AmelieSchreiber/toricblm_fot updated a dataset 3 days ago
AmelieSchreiber/uniprot_fotOrganizations
Posts 5
Post
2084
Latest OpenAI Parameter Golf Competition Training Run BPB (<1K steps on a single 4090) See: ToricBLM, ToricGT, and TropicalGT methods
Articles 21
Article
ToricBLM: Thought Alcoves, Tropical Attention, and Small Models With Serious Geometry
ESMBind (or ESMB) are LoRA finetuned ESM-2 models for predicting general binding sites and active sites of proteins based on sequence alone.
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AmelieSchreiber/esm2_t12_35M_lora_binding_sites_770K_v1
Updated -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp3
Token Classification • Updated • 7 • 6 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp2
Token Classification • Updated • 1 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp1
Token Classification • Updated • 1
A retraining of a TokenGT, embedding space GFlowNets GoT reasoning 4x4M-Soft-MoE model with tropical ring attention and geometric algebra constraints
ESMBind (or ESMB) are LoRA finetuned ESM-2 models for predicting general binding sites and active sites of proteins based on sequence alone.
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AmelieSchreiber/esm2_t12_35M_lora_binding_sites_770K_v1
Updated -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp3
Token Classification • Updated • 7 • 6 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp2
Token Classification • Updated • 1 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp1
Token Classification • Updated • 1
models 60
AmelieSchreiber/ToricGT_160M_FoT
Text Generation • Updated
AmelieSchreiber/toricgt-checkpoints
Updated
AmelieSchreiber/UBio-E2Former-LSR
Updated
AmelieSchreiber/LucaOne
Updated • 10
AmelieSchreiber/RoseTTAFold2-PPI
Updated
AmelieSchreiber/AlphaChip
Updated • 2
AmelieSchreiber/IgDiff
Updated
AmelieSchreiber/DiG
Updated
AmelieSchreiber/Graphormer
Updated
AmelieSchreiber/esm_mlmppi_ph50_40K
Updated
datasets 27
AmelieSchreiber/toricblm_fot
Preview • Updated • 32
AmelieSchreiber/uniprot_fot
Viewer • Updated • 1 • 35
AmelieSchreiber/codex5.5_ToT
Viewer • Updated • 3.89k • 45
AmelieSchreiber/toricgt-curated-splits
Viewer • Updated • 5.79M • 2.25k
AmelieSchreiber/DynamicPDB
Updated • 12
AmelieSchreiber/ATLAS
Updated • 13
AmelieSchreiber/iska-net-2_base
Updated • 10
AmelieSchreiber/ReactZyme
Viewer • Updated • 258k • 31
AmelieSchreiber/pha_clustered_protein_complexes_40K
Viewer • Updated • 40k • 8
AmelieSchreiber/pha_clustered_protein_complexes_30K
Viewer • Updated • 30k • 10