A retraining of a TokenGT, embedding space GFlowNets GoT reasoning 4x4M-Soft-MoE model with tropical ring attention and geometric algebra constraints
Amelie Schreiber
AmelieSchreiber
AI & ML interests
Diffusion and flow matching models for proteins, small molecules, DNA, and RNA, protein language models, machine translation, equivariant attention mechanisms, LoRA, and QLoRA.
Recent Activity
updated a dataset about 1 month ago
AmelieSchreiber/toricblm-dataset-state-toricblm-structure-priority-balanced-3day-20260709t185034z-epoch-002 published a dataset about 1 month ago
AmelieSchreiber/toricblm-dataset-state-toricblm-structure-priority-balanced-3day-20260709t185034z-epoch-002 updated a dataset about 1 month ago
AmelieSchreiber/toricblm-dataset-state-toricblm-structure-priority-balanced-3day-20260709t185034z-epoch-001Organizations
QLoRAs for various ESM-2 models for predicting binding sites of protein sequences.
ESM-2 models finetuned for generating peptide binders and predicting protein-protein interactions using MLM capabilities. None of the models work well
ESMBind (or ESMB) are LoRA finetuned ESM-2 models for predicting general binding sites and active sites of proteins based on sequence alone.
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AmelieSchreiber/esm2_t12_35M_lora_binding_sites_770K_v1
Updated • 3 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp3
Token Classification • Updated • 43 • 7 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp2
Token Classification • Updated • 5 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp1
Token Classification • Updated • 20
This is a collection of LoRA and QLoRA finetuned ESM-2 models and datasets for predicting post translational modification sites on proteins.
A retraining of a TokenGT, embedding space GFlowNets GoT reasoning 4x4M-Soft-MoE model with tropical ring attention and geometric algebra constraints
ESMBind (or ESMB) are LoRA finetuned ESM-2 models for predicting general binding sites and active sites of proteins based on sequence alone.
-
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_770K_v1
Updated • 3 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp3
Token Classification • Updated • 43 • 7 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp2
Token Classification • Updated • 5 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp1
Token Classification • Updated • 20
QLoRAs for various ESM-2 models for predicting binding sites of protein sequences.
This is a collection of LoRA and QLoRA finetuned ESM-2 models and datasets for predicting post translational modification sites on proteins.
ESM-2 models finetuned for generating peptide binders and predicting protein-protein interactions using MLM capabilities. None of the models work well