GID-Flow / PDGrapher /data /scripts /ppi /README.md
Boom5426's picture
Upload GID-Flow project snapshot (deduped: code + key artifacts)
07fcdfe verified
|
Raw
History Blame Contribute Delete
305 Bytes

Builld PPI for PDGrapher

  1. Using hgnc2map.txt (in data/raw/ppi/2022-03-PPI) with the raw PPI files (links are listed in the same folder), run union_ppi.py to generate ppi_edgelist.txt
  2. Using geneinfo_beta.txt and ppi_edgelist.txt, run export_ppi_all_genes.py to build ppi_all_genes_edgelist.txt