BrainMed-8B-SFT / evaluation /COMPARISON.md
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Comparison against the published 7B-8B models

Our rows are measured by this pipeline. Every other row is transcribed from MedReason (arXiv:2504.00993) and was not re-run.

Excluded from this table: MedReason-8B.

Backbone shown with its published values (Huatuo-o1-RL-8B), not the score measured on this harness.

Harness offset measured on the untouched backbone: +2.89 pt vs the published protocol. Subtract it before reading our-vs-published gaps.

Table A β€” Ranking on the paper's six-benchmark suite

# Model MB-op4 MB-op5 MedXpert MedQA MedMCQA PubMedQA Avg
1 brainmed-8b-final (ours) 62.01 54.87 18.63 76.67 64.07 79.10 59.23
2 brainmed-8b-v1__soup-last-a0.3 (ours) 62.01 52.92 18.63 76.67 64.07 79.10 58.90
3 brainmed-8b-v1__soup-last-a0.7 (ours) 60.71 56.49 19.32 76.12 62.87 77.90 58.90
4 brainmed-8b-v1__soup-last-a0.5 (ours) 58.77 54.55 18.91 76.90 64.36 78.90 58.73
5 brainmed-8b-v1__soup-a0.3 (ours) 59.42 54.87 16.43 76.28 62.54 80.00 58.26
6 brainmed-8b-v1__soup-a0.15 (ours) 60.06 50.97 16.08 77.85 63.21 81.20 58.23
7 brainmed-8b-v1__epoch-3 (ours) 58.77 56.82 18.08 72.11 61.20 77.10 57.35
8 brainmed-8b-v1 (ours) 56.49 50.65 17.81 72.58 60.22 77.70 55.91
9 brainmed-8b-v1__best (ours) 56.49 50.65 17.81 72.58 60.22 77.70 55.91
10 Huatuo-o1-RL-8B 55.20 51.30 16.70 72.60 60.40 79.20 55.90
11 brainmed-8b-v1__epoch-1 (ours) 55.52 50.00 15.87 70.62 59.77 77.50 54.88
12 Huatuo-o1-SFT-8B 53.30 49.70 17.30 70.20 58.20 76.10 54.10
13 Qwen2.5-Instruct-7B 50.00 41.60 12.60 57.00 55.60 72.70 48.20
14 Llama3.1-Instruct-8B 43.20 40.90 14.30 58.70 56.00 75.20 48.00
15 OpenBioLLM-8B 39.20 35.70 10.70 57.70 54.10 74.10 45.30
16 DeepSeek-Distill-8B 41.90 35.10 13.50 55.40 49.00 73.90 44.80
17 Medical-CoT-8B 39.30 34.10 12.60 49.00 42.60 68.00 40.90
18 BioMistral-7B 46.40 33.10 12.40 45.00 40.20 66.90 40.70
19 Mistral-Instruct-7B 43.50 33.40 11.40 48.20 44.90 50.10 38.60
20 Medical-Llama3-8B 33.40 25.30 9.00 40.30 46.80 48.00 33.80

Table B β€” brainmed-8b-final vs published Huatuo-o1-RL-8B

| Benchmark | Huatuo-o1-RL-8B (published) | brainmed-8b-final

(measured) | Delta | | |---|---|---|---|---| | MB-op4 | 55.20 | 62.01 | +6.81 | win | | MB-op5 | 51.30 | 54.87 | +3.57 | win | | MedXpert | 16.70 | 18.63 | +1.93 | win | | MedQA | 72.60 | 76.67 | +4.07 | win | | MedMCQA | 60.40 | 64.07 | +3.67 | win | | PubMedQA | 79.20 | 79.10 | -0.10 | | | Average | 55.90 | 59.23 | +3.33 | win |

Table B β€” brainmed-8b-v1 vs published Huatuo-o1-RL-8B

| Benchmark | Huatuo-o1-RL-8B (published) | brainmed-8b-v1

(measured) | Delta | | |---|---|---|---|---| | MB-op4 | 55.20 | 56.49 | +1.29 | win | | MB-op5 | 51.30 | 50.65 | -0.65 | | | MedXpert | 16.70 | 17.81 | +1.11 | win | | MedQA | 72.60 | 72.58 | -0.02 | | | MedMCQA | 60.40 | 60.22 | -0.18 | | | PubMedQA | 79.20 | 77.70 | -1.50 | | | Average | 55.90 | 55.91 | +0.01 | win |

Table B β€” brainmed-8b-v1__best vs published Huatuo-o1-RL-8B

| Benchmark | Huatuo-o1-RL-8B (published) | brainmed-8b-v1__best

(measured) | Delta | | |---|---|---|---|---| | MB-op4 | 55.20 | 56.49 | +1.29 | win | | MB-op5 | 51.30 | 50.65 | -0.65 | | | MedXpert | 16.70 | 17.81 | +1.11 | win | | MedQA | 72.60 | 72.58 | -0.02 | | | MedMCQA | 60.40 | 60.22 | -0.18 | | | PubMedQA | 79.20 | 77.70 | -1.50 | | | Average | 55.90 | 55.91 | +0.01 | win |

Table B β€” brainmed-8b-v1__epoch-1 vs published Huatuo-o1-RL-8B

| Benchmark | Huatuo-o1-RL-8B (published) | brainmed-8b-v1__epoch-1

(measured) | Delta | | |---|---|---|---|---| | MB-op4 | 55.20 | 55.52 | +0.32 | win | | MB-op5 | 51.30 | 50.00 | -1.30 | | | MedXpert | 16.70 | 15.87 | -0.83 | | | MedQA | 72.60 | 70.62 | -1.98 | | | MedMCQA | 60.40 | 59.77 | -0.63 | | | PubMedQA | 79.20 | 77.50 | -1.70 | | | Average | 55.90 | 54.88 | -1.02 | |

Table B β€” brainmed-8b-v1__epoch-3 vs published Huatuo-o1-RL-8B

| Benchmark | Huatuo-o1-RL-8B (published) | brainmed-8b-v1__epoch-3

(measured) | Delta | | |---|---|---|---|---| | MB-op4 | 55.20 | 58.77 | +3.57 | win | | MB-op5 | 51.30 | 56.82 | +5.52 | win | | MedXpert | 16.70 | 18.08 | +1.38 | win | | MedQA | 72.60 | 72.11 | -0.49 | | | MedMCQA | 60.40 | 61.20 | +0.80 | win | | PubMedQA | 79.20 | 77.10 | -2.10 | | | Average | 55.90 | 57.35 | +1.45 | win |

Table B β€” brainmed-8b-v1__soup-a0.15 vs published Huatuo-o1-RL-8B

| Benchmark | Huatuo-o1-RL-8B (published) | brainmed-8b-v1__soup-a0.15

(measured) | Delta | | |---|---|---|---|---| | MB-op4 | 55.20 | 60.06 | +4.86 | win | | MB-op5 | 51.30 | 50.97 | -0.33 | | | MedXpert | 16.70 | 16.08 | -0.62 | | | MedQA | 72.60 | 77.85 | +5.25 | win | | MedMCQA | 60.40 | 63.21 | +2.81 | win | | PubMedQA | 79.20 | 81.20 | +2.00 | win | | Average | 55.90 | 58.23 | +2.33 | win |

Table B β€” brainmed-8b-v1__soup-a0.3 vs published Huatuo-o1-RL-8B

| Benchmark | Huatuo-o1-RL-8B (published) | brainmed-8b-v1__soup-a0.3

(measured) | Delta | | |---|---|---|---|---| | MB-op4 | 55.20 | 59.42 | +4.22 | win | | MB-op5 | 51.30 | 54.87 | +3.57 | win | | MedXpert | 16.70 | 16.43 | -0.27 | | | MedQA | 72.60 | 76.28 | +3.68 | win | | MedMCQA | 60.40 | 62.54 | +2.14 | win | | PubMedQA | 79.20 | 80.00 | +0.80 | win | | Average | 55.90 | 58.26 | +2.36 | win |

Table B β€” brainmed-8b-v1__soup-last-a0.3 vs published Huatuo-o1-RL-8B

| Benchmark | Huatuo-o1-RL-8B (published) | brainmed-8b-v1__soup-last-a0.3

(measured) | Delta | | |---|---|---|---|---| | MB-op4 | 55.20 | 62.01 | +6.81 | win | | MB-op5 | 51.30 | 52.92 | +1.62 | win | | MedXpert | 16.70 | 18.63 | +1.93 | win | | MedQA | 72.60 | 76.67 | +4.07 | win | | MedMCQA | 60.40 | 64.07 | +3.67 | win | | PubMedQA | 79.20 | 79.10 | -0.10 | | | Average | 55.90 | 58.90 | +3.00 | win |

Table B β€” brainmed-8b-v1__soup-last-a0.5 vs published Huatuo-o1-RL-8B

| Benchmark | Huatuo-o1-RL-8B (published) | brainmed-8b-v1__soup-last-a0.5

(measured) | Delta | | |---|---|---|---|---| | MB-op4 | 55.20 | 58.77 | +3.57 | win | | MB-op5 | 51.30 | 54.55 | +3.25 | win | | MedXpert | 16.70 | 18.91 | +2.21 | win | | MedQA | 72.60 | 76.90 | +4.30 | win | | MedMCQA | 60.40 | 64.36 | +3.96 | win | | PubMedQA | 79.20 | 78.90 | -0.30 | | | Average | 55.90 | 58.73 | +2.83 | win |

Table B β€” brainmed-8b-v1__soup-last-a0.7 vs published Huatuo-o1-RL-8B

| Benchmark | Huatuo-o1-RL-8B (published) | brainmed-8b-v1__soup-last-a0.7

(measured) | Delta | | |---|---|---|---|---| | MB-op4 | 55.20 | 60.71 | +5.51 | win | | MB-op5 | 51.30 | 56.49 | +5.19 | win | | MedXpert | 16.70 | 19.32 | +2.62 | win | | MedQA | 72.60 | 76.12 | +3.52 | win | | MedMCQA | 60.40 | 62.87 | +2.47 | win | | PubMedQA | 79.20 | 77.90 | -1.30 | | | Average | 55.90 | 58.90 | +3.00 | win |

Table D β€” Eight-benchmark suite (MedReason Table 2 columns)

Model / data MedQA MedMCQA PubMedQA MMLU-Pro MB-op4 MB-op5 MedXpert HLE(med) Avg
Llama3.1-Instruct-8B (base) 58.70 56.00 75.20 58.20 48.70 42.50 13.20 13.60 45.80
Llama3.1-Instruct-8B + Huatuo CoT 70.20 58.20 76.10 59.90 53.30 49.70 17.30 14.60 49.90
Llama3.1-Instruct-8B + MedReason 68.40 57.50 77.60 63.10 57.50 52.30 16.40 16.50 51.20
Mistral-Instruct-7B (base) 48.20 44.90 50.10 42.70 43.50 33.40 11.40 14.60 36.10
Mistral-Instruct-7B + Huatuo CoT 59.90 46.90 57.50 47.60 50.00 46.10 14.40 14.60 42.10
Mistral-Instruct-7B + MedReason 58.70 48.90 59.20 50.80 52.30 47.10 16.60 24.30 44.70
brainmed-8b-final (ours) 76.67 64.07 79.10 65.73 62.01 54.87 18.63 10.68 53.97
brainmed-8b-v1 (ours) 72.58 60.22 77.70 61.82 56.49 50.65 17.81 20.39 52.21