| # Model settings: where is the model you wish to use for mutation discovery? | |
| FUSON_PLM_CKPT = "FusOn-pLM" | |
| #### Fill in this sectinon if you have one input | |
| # Sequence settings: need full sequence of fusion oncoprotein, and the bounds of region of interest | |
| FULL_FUSION_SEQUENCE = "" | |
| FUSION_NAME = "fusion_example" | |
| START_RESIDUE_INDEX = 1 | |
| END_RESIDUE_INDEX = 100 | |
| N = 3 # number of mutations to predict per amio acid | |
| #### Fill in this section if you have multiple input | |
| PATH_TO_INPUT_FILE = "processed_data/domain_conservation_fusions_inputfile.csv" # if you don't have an input file and want to do one sequence, set this variable to None | |
| # GPU Settings: which GPUs should be available to run this discovery? | |
| CUDA_VISIBLE_DEVICES = "0" |