Instructions to use DUTIR-BioNLP/RexDrug-base with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

Libraries

How to use DUTIR-BioNLP/RexDrug-base with Transformers:

# Use a pipeline as a high-level helper
from transformers import pipeline

pipe = pipeline("text-generation", model="DUTIR-BioNLP/RexDrug-base")
messages = [
    {"role": "user", "content": "Who are you?"},
]
pipe(messages)

# pip install -U transformers accelerate
# Load model directly
from transformers import AutoTokenizer, AutoModelForCausalLM

tokenizer = AutoTokenizer.from_pretrained("DUTIR-BioNLP/RexDrug-base")
model = AutoModelForCausalLM.from_pretrained("DUTIR-BioNLP/RexDrug-base", device_map="auto")
messages = [
    {"role": "user", "content": "Who are you?"},
]
inputs = tokenizer.apply_chat_template(
	messages,
	add_generation_prompt=True,
	tokenize=True,
	return_dict=True,
	return_tensors="pt",
).to(model.device)

outputs = model.generate(**inputs, max_new_tokens=256)
print(tokenizer.decode(outputs[0][inputs["input_ids"].shape[-1]:]))

Notebooks
Google Colab
Kaggle
Local Apps Settings

vLLM

How to use DUTIR-BioNLP/RexDrug-base with vLLM:

Install from pip and serve model

# Install vLLM from pip:
pip install vllm
# Start the vLLM server:
vllm serve "DUTIR-BioNLP/RexDrug-base"
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:8000/v1/chat/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "DUTIR-BioNLP/RexDrug-base",
		"messages": [
			{
				"role": "user",
				"content": "What is the capital of France?"
			}
		]
	}'

Use Docker

docker model run hf.co/DUTIR-BioNLP/RexDrug-base

SGLang

How to use DUTIR-BioNLP/RexDrug-base with SGLang:

Install from pip and serve model

# Install SGLang from pip:
pip install sglang
# Start the SGLang server:
python3 -m sglang.launch_server \
    --model-path "DUTIR-BioNLP/RexDrug-base" \
    --host 0.0.0.0 \
    --port 30000
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:30000/v1/chat/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "DUTIR-BioNLP/RexDrug-base",
		"messages": [
			{
				"role": "user",
				"content": "What is the capital of France?"
			}
		]
	}'

Use Docker images

docker run --gpus all \
    --shm-size 32g \
    -p 30000:30000 \
    -v ~/.cache/huggingface:/root/.cache/huggingface \
    --env "HF_TOKEN=<secret>" \
    --ipc=host \
    lmsysorg/sglang:latest \
    python3 -m sglang.launch_server \
        --model-path "DUTIR-BioNLP/RexDrug-base" \
        --host 0.0.0.0 \
        --port 30000
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:30000/v1/chat/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "DUTIR-BioNLP/RexDrug-base",
		"messages": [
			{
				"role": "user",
				"content": "What is the capital of France?"
			}
		]
	}'

Docker Model Runner
How to use DUTIR-BioNLP/RexDrug-base with Docker Model Runner:
```
docker model run hf.co/DUTIR-BioNLP/RexDrug-base
```
Browse Quantizations to use this model in llama.cpp, Ollama, LM Studio, or any compatible app.

RexDrug-Base

This is the SFT (Supervised Fine-Tuning) base model for RexDrug, a chain-of-thought reasoning model for biomedical drug combination relation extraction.

Model Details

Base architecture: Llama-3.1-8B-Instruct
Fine-tuning method: SFT with LoRA (merged)
Task: Drug combination relation extraction from biomedical literature
Relation types: POS (beneficial), NEG (harmful), COMB (neutral/mixed), NO_COMB (no combination)

Usage

This model is intended to be used with the RexDrug-adapter (LoRA adapter trained via GRPO). See the adapter repository for the full quick start guide.

from transformers import AutoTokenizer, AutoModelForCausalLM
from peft import PeftModel
import torch

model = AutoModelForCausalLM.from_pretrained(
    "DUTIR-BioNLP/RexDrug-base",
    torch_dtype=torch.bfloat16,
    device_map="auto",
)
model = PeftModel.from_pretrained(model, "DUTIR-BioNLP/RexDrug-adapter")