| | --- |
| | datasets: |
| | - EvaKlimentova/knots_AF |
| | --- |
| | # M1 - finetuned ProtBert-BFD |
| |
|
| | The model is trained on [knots_AF dataset](https://huggingface.co/datasets/EvaKlimentova/knots_AF) |
| |
|
| | The accuracy on the test set is ~ 0.9848 |
| |
|
| | | M1 ProtBert BFD | Dataset size | Unknotted set size | Accuracy | TPR | TNR | |
| | |:----------------------------:|:------------:|:------------------:|:--------:|:------:|:-------:| |
| | | All | 39412 | 19718 | 0.9848 | 0.9871 | 0.9826 | |
| | | SPOUT | 7371 | 550 | 0.9905 | 0.9963 | 0.9182 | |
| | | TDD | 612 | 24 | 0.9918 | 0.9966 | 0.8750 | |
| | | DUF | 736 | 429 | 0.97905 | 0.9826 | 0.9767 | |
| | | AdoMet synthase | 1794 | 240 | 0.9939 | 0.9968 | 0.9750 | |
| | | Carbonic anhydrase | 1531 | 539 | 0.9556 | 0.9718 | 0.9258 | |
| | | UCH | 477 | 125 | 0.9099 | 0.9631 | 0.7600 | |
| | | ATCase/OTCase | 3799 | 3352 | 0.9992 | 0.9955 | 0.9997 | |
| | | ribosomal-mitochondrial | 147 | 41 | 0.8912 | 0.9906 | 0.63412 | |
| | | membrane | 8309 | 1577 | 0.9791 | 0.9895 | 0.9347 | |
| | | VIT | 14347 | 12639 | 0.9873 | 0.9415 | 0.9935 | |
| | | biosynthesis of lantibiotics | 392 | 286 | 0.9719 | 0.9811 | 0.9685 | |
| | | PGluconate dehydrogenase | 1 | 0 | 1.0 | 1.0 | | |
