Upload folder using huggingface_hub
#2
by
avantikalal
- opened
README.md
CHANGED
|
@@ -7,17 +7,19 @@ tags:
|
|
| 7 |
- biology
|
| 8 |
- genomics
|
| 9 |
datasets:
|
| 10 |
-
- Genentech/human-
|
|
|
|
|
|
|
| 11 |
---
|
| 12 |
|
| 13 |
-
# human-
|
| 14 |
|
| 15 |
## Model Description
|
| 16 |
-
This model is a multi-
|
| 17 |
|
| 18 |
- **Architecture:** Fine-tuned Enformer
|
| 19 |
- **Input:** Genomic sequences (hg38)
|
| 20 |
-
- **Output:**
|
| 21 |
|
| 22 |
## Repository Content
|
| 23 |
1. `model.ckpt`: The trained model weights and hyperparameters (PyTorch Lightning checkpoint).
|
|
@@ -32,7 +34,7 @@ from grelu.lightning import LightningModel
|
|
| 32 |
from huggingface_hub import hf_hub_download
|
| 33 |
|
| 34 |
ckpt_path = hf_hub_download(
|
| 35 |
-
repo_id="Genentech/human-
|
| 36 |
filename="model.ckpt"
|
| 37 |
)
|
| 38 |
|
|
|
|
| 7 |
- biology
|
| 8 |
- genomics
|
| 9 |
datasets:
|
| 10 |
+
- Genentech/human-chromhmm-fullstack-data
|
| 11 |
+
base_model:
|
| 12 |
+
- Genentech/enformer-model
|
| 13 |
---
|
| 14 |
|
| 15 |
+
# human-chromhmm-fullstack-model
|
| 16 |
|
| 17 |
## Model Description
|
| 18 |
+
This model is a multi-class classifier trained to classify genomic DNA sequences into one of 16 classes. It was trained by fine-tuning the Enformer model using the `grelu` library on top of the human ChromHMM fullstack annotation dataset.
|
| 19 |
|
| 20 |
- **Architecture:** Fine-tuned Enformer
|
| 21 |
- **Input:** Genomic sequences (hg38)
|
| 22 |
+
- **Output:** Probability across 16 class labels.
|
| 23 |
|
| 24 |
## Repository Content
|
| 25 |
1. `model.ckpt`: The trained model weights and hyperparameters (PyTorch Lightning checkpoint).
|
|
|
|
| 34 |
from huggingface_hub import hf_hub_download
|
| 35 |
|
| 36 |
ckpt_path = hf_hub_download(
|
| 37 |
+
repo_id="Genentech/human-chromhmm-fullstack-model",
|
| 38 |
filename="model.ckpt"
|
| 39 |
)
|
| 40 |
|