How to use from the
Use from the
Transformers library
# Use a pipeline as a high-level helper
from transformers import pipeline

pipe = pipeline("text-generation", model="Huggggooo/ProtoCycle-7B")
messages = [
    {"role": "user", "content": "Who are you?"},
]
pipe(messages)
# Load model directly
from transformers import AutoTokenizer, AutoModelForCausalLM

tokenizer = AutoTokenizer.from_pretrained("Huggggooo/ProtoCycle-7B")
model = AutoModelForCausalLM.from_pretrained("Huggggooo/ProtoCycle-7B")
messages = [
    {"role": "user", "content": "Who are you?"},
]
inputs = tokenizer.apply_chat_template(
	messages,
	add_generation_prompt=True,
	tokenize=True,
	return_dict=True,
	return_tensors="pt",
).to(model.device)

outputs = model.generate(**inputs, max_new_tokens=40)
print(tokenizer.decode(outputs[0][inputs["input_ids"].shape[-1]:]))
Quick Links

ProtoCycle-7B

RL checkpoint for ProtoCycle — an agentic protein design model that performs multi-step, tool-augmented sequence design.

This is the GRPO-TCR (Group Relative Policy Optimization with Tool-Call Reward) stage, initialised from the SFT checkpoint Huggggooo/ProtoCycle-7B-SFT.

See recipe/protein/reward.py for the exact formulation.

Training Data

10,000 RL prompts for GRPO-TCR training, available at Huggggooo/ProtoCycle-Data (rl/ subset).}

Agent Protocol

<think>  ... reasoning ...  </think>
<plan>   ... stage plan ...  </plan>
<tool_call>{"name": "...", "arguments": {...}}</tool_call>
...
<answer>MAEGEITPLKTF...</answer>

How to Use

See the ProtoCycle repository: ProtoCycle repo.

License

Apache-2.0.

Citation

If you find this work useful, please cite ProtoCycle (forthcoming) and the upstream frameworks: VeRL, Open-AgentRL, ProTrek, ESM.

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