Instructions to use HuggingFaceBio/Carbon-X with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

Libraries

How to use HuggingFaceBio/Carbon-X with Transformers:

# Use a pipeline as a high-level helper
from transformers import pipeline

pipe = pipeline("text-generation", model="HuggingFaceBio/Carbon-X")
messages = [
    {"role": "user", "content": "Who are you?"},
]
pipe(messages)

# pip install -U transformers accelerate
# Load model directly
from transformers import AutoTokenizer, AutoModelForCausalLM

tokenizer = AutoTokenizer.from_pretrained("HuggingFaceBio/Carbon-X")
model = AutoModelForCausalLM.from_pretrained("HuggingFaceBio/Carbon-X", device_map="auto")
messages = [
    {"role": "user", "content": "Who are you?"},
]
inputs = tokenizer.apply_chat_template(
	messages,
	add_generation_prompt=True,
	tokenize=True,
	return_dict=True,
	return_tensors="pt",
).to(model.device)

outputs = model.generate(**inputs, max_new_tokens=256)
print(tokenizer.decode(outputs[0][inputs["input_ids"].shape[-1]:]))

Notebooks
Google Colab
Kaggle
Local Apps Settings

vLLM

How to use HuggingFaceBio/Carbon-X with vLLM:

Install from pip and serve model

# Install vLLM from pip:
pip install vllm
# Start the vLLM server:
vllm serve "HuggingFaceBio/Carbon-X"
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:8000/v1/chat/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "HuggingFaceBio/Carbon-X",
		"messages": [
			{
				"role": "user",
				"content": "What is the capital of France?"
			}
		]
	}'

Use Docker

docker model run hf.co/HuggingFaceBio/Carbon-X

SGLang

How to use HuggingFaceBio/Carbon-X with SGLang:

Install from pip and serve model

# Install SGLang from pip:
pip install sglang
# Start the SGLang server:
python3 -m sglang.launch_server \
    --model-path "HuggingFaceBio/Carbon-X" \
    --host 0.0.0.0 \
    --port 30000
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:30000/v1/chat/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "HuggingFaceBio/Carbon-X",
		"messages": [
			{
				"role": "user",
				"content": "What is the capital of France?"
			}
		]
	}'

Use Docker images

docker run --gpus all \
    --shm-size 32g \
    -p 30000:30000 \
    -v ~/.cache/huggingface:/root/.cache/huggingface \
    --env "HF_TOKEN=<secret>" \
    --ipc=host \
    lmsysorg/sglang:latest \
    python3 -m sglang.launch_server \
        --model-path "HuggingFaceBio/Carbon-X" \
        --host 0.0.0.0 \
        --port 30000
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:30000/v1/chat/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "HuggingFaceBio/Carbon-X",
		"messages": [
			{
				"role": "user",
				"content": "What is the capital of France?"
			}
		]
	}'

Docker Model Runner
How to use HuggingFaceBio/Carbon-X with Docker Model Runner:
```
docker model run hf.co/HuggingFaceBio/Carbon-X
```

Question about releasing the evaluation datasets for Carbon-X

by abjlzzyy - opened about 7 hours ago

Discussion

abjlzzyy

about 7 hours ago

Hi Carbon-X team,

Thank you for releasing Carbon-X and sharing the evaluation results.

I would like to independently reproduce the five benchmark scores reported in the model card. Could you please share the dataset links or clarify how to access the exact evaluation sets used?

In particular, I am looking for:

GenomeQA: The exact 2,600-question evaluation subset and its labels.

NextBase: The 600 test sequences, reference continuations, and evaluation procedure.

FrontierVEP: The 1,000 test examples, including variant definitions and ground-truth labels.

Evaluation code: The prompts, inference settings, scoring scripts, and instructions needed to reproduce the reported results.

Are these resources available in another repository or dataset page? If they are not currently public, do you plan to release them?

I am particularly interested in independently verifying the results and understanding how the evaluation sets were constructed.

Thank you for your time and for sharing your work!

loubnabnl

Hugging Face Biology Research org about 1 hour ago

Hi thank you! We'll release everything in the upcoming weeks

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