| --- |
| language: es |
| tags: |
| - biomedical |
| - clinical |
| - spanish |
| - bsc-bio-ehr-es |
| license: apache-2.0 |
| datasets: |
| - "PlanTL-GOB-ES/pharmaconer" |
| metrics: |
| - f1 |
|
|
| model-index: |
| - name: IIC/bsc-bio-ehr-es-pharmaconer |
| results: |
| - task: |
| type: token-classification |
| dataset: |
| name: pharmaconer |
| type: PlanTL-GOB-ES/pharmaconer |
| split: test |
| metrics: |
| - name: f1 |
| type: f1 |
| value: 0.904 |
| pipeline_tag: token-classification |
| widget: |
| - text: "Se realizó estudio analítico destacando incremento de niveles de PTH y vitamina D (103,7 pg/ml y 272 ng/ml, respectivamente), atribuidos al exceso de suplementación de vitamina D." |
| - text: " Por el hallazgo de múltiples fracturas por estrés, se procedió a estudio en nuestras consultas, realizándose análisis con función renal, calcio sérico y urinario, calcio iónico, magnesio y PTH, que fueron normales." |
| - text: "Se solicitó una analítica que incluía hemograma, bioquímica, anticuerpos antinucleares (ANA) y serologías, examen de orina, así como biopsia de la lesión. Los resultados fueron normales, con ANA, anti-Sm, anti-RNP, anti-SSA, anti-SSB, anti-Jo1 y anti-Scl70 negativos." |
|
|
| --- |
| |
| # bsc-bio-ehr-es-pharmaconer |
|
|
| This model is a finetuned version of bsc-bio-ehr-es for the pharmaconer dataset used in a benchmark in the paper `A comparative analysis of Spanish Clinical encoder-based models on NER and classification tasks`. The model has a F1 of 0.904 |
|
|
| Please refer to the [original publication](https://doi.org/10.1093/jamia/ocae054) for more information. |
|
|
| ## Parameters used |
|
|
| | parameter | Value | |
| |-------------------------|:-----:| |
| | batch size | 16 | |
| | learning rate | 4e-05 | |
| | classifier dropout | 0.1 | |
| | warmup ratio | 0 | |
| | warmup steps | 0 | |
| | weight decay | 0 | |
| | optimizer | AdamW | |
| | epochs | 10 | |
| | early stopping patience | 3 | |
|
|
|
|
| ## BibTeX entry and citation info |
|
|
| ```bibtext |
| @article{10.1093/jamia/ocae054, |
| author = {García Subies, Guillem and Barbero Jiménez, Álvaro and Martínez Fernández, Paloma}, |
| title = {A comparative analysis of Spanish Clinical encoder-based models on NER and classification tasks}, |
| journal = {Journal of the American Medical Informatics Association}, |
| volume = {31}, |
| number = {9}, |
| pages = {2137-2146}, |
| year = {2024}, |
| month = {03}, |
| issn = {1527-974X}, |
| doi = {10.1093/jamia/ocae054}, |
| url = {https://doi.org/10.1093/jamia/ocae054}, |
| } |
| ``` |
|
|
|
|
