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InstaDeepAI
/
nucleotide-transformer-2.5b-multi-species

Fill-Mask
Transformers
PyTorch
google-tensorflow TensorFlow
Joblib
esm
DNA
biology
genomics
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xet
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9

Instructions to use InstaDeepAI/nucleotide-transformer-2.5b-multi-species with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

  • Libraries
  • Transformers

    How to use InstaDeepAI/nucleotide-transformer-2.5b-multi-species with Transformers:

    # Use a pipeline as a high-level helper
    from transformers import pipeline
    
    pipe = pipeline("fill-mask", model="InstaDeepAI/nucleotide-transformer-2.5b-multi-species")
    # Load model directly
    from transformers import AutoTokenizer, AutoModelForMaskedLM
    
    tokenizer = AutoTokenizer.from_pretrained("InstaDeepAI/nucleotide-transformer-2.5b-multi-species")
    model = AutoModelForMaskedLM.from_pretrained("InstaDeepAI/nucleotide-transformer-2.5b-multi-species")
  • Notebooks
  • Google Colab
  • Kaggle
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  • Code of Conduct
  • Hub documentation

Error when trying to generate embeddings "IndexError: index out of range in self"

#9 opened over 1 year ago by
Larel5

Adding `safetensors` variant of this model

#8 opened over 1 year ago by
SFconvertbot

Model Embedding and vocab size mismatch.

#7 opened about 2 years ago by
pg20sanger

Adding `safetensors` variant of this model

#6 opened about 2 years ago by
SFconvertbot

[AUTOMATED] Model Memory Requirements

#5 opened over 2 years ago by
model-sizer-bot

[CLS] for donwstream tasks.

1
#4 opened over 2 years ago by
jinyuan22

how can i train that on my rna sequence dataset

#3 opened almost 3 years ago by
zepoch
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