How to use InstaDeepAI/nucleotide-transformer-500m-human-ref with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="InstaDeepAI/nucleotide-transformer-500m-human-ref")
# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("InstaDeepAI/nucleotide-transformer-500m-human-ref") model = AutoModelForMaskedLM.from_pretrained("InstaDeepAI/nucleotide-transformer-500m-human-ref")
I’m wondering if it’s possible for the pretrained model to tokenize the base ‘N’ in the sequence of the genome reference
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