EpiClass models
Collection
Classifier models trained on EpiATLAS dataset that were applied to ChIP-Atlas, ENCODE and recount3 datasets. (see paper)
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6 items
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Epigenomic Classifer - Donor life stage
Epigenome life stage classifier trained on the EpiATLAS dataset. The classes are:
- adult
- child
- embryonic
- fetal
- newborn
The model is a simple dense feedforward neural network, with one hidden layer of 3000 nodes. The model was trained using PyTorch Lightning. See Github repository labjacquespe/EpiClass for model code.
See the .o and .e files for training details. More information is also available on Comet ML, in the rabyj/epiclass project. The ID of this training run is 91214ed0b1664395b1826dc69a495ed4
For more context, see the associated publication: Leveraging a large harmonized epigenomic data collection for metadata prediction to validate and augment over 350,000 public epigenomic datasets
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