NCHC-bio
/

cell_x_gene_exploratory_data_analysis

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cell_x_gene_exploratory_data_analysis

7.38 MB

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2 contributors

History: 51 commits

whats2000's picture

feat(data): add new .h5ad sample file for scRNA-seq dataset

febaca1 3 months ago

configs
feat(config): update dataset size thresholds for improved processing efficiency 3 months ago
notebooks
feat(visualization): add detail gene visualization reuslt 3 months ago
output
feat(config): update dataset size thresholds for improved processing efficiency 3 months ago
sample
feat(data): add new .h5ad sample file for scRNA-seq dataset 3 months ago
scripts
feat(eda): normalize dataset paths and deduplicate results in summary 3 months ago
.gitattributes

1.56 kB
fix(gitattributes): add .h5ad file type to LFS tracking 3 months ago
.gitignore

153 Bytes
feat(slurm): create logs directory and add to gitignore 3 months ago
README.md

11.5 kB
feat(eda): update large file processing to support parallel workers and enhance metadata caching 3 months ago
launch_jupyter.sh

256 Bytes
Initial commit: distributed EDA pipeline, max non-zero reporting, and notebook 3 months ago
pyproject.toml

538 Bytes
feat(eda): migrate to Dask distributed with adaptive scaling and memory limits 3 months ago
run_eda_slurm.sh

4.46 kB
feat(eda): add cache validation and retry mechanism for metadata build 3 months ago
uv.lock

752 kB
feat(eda): migrate to Dask distributed with adaptive scaling and memory limits 3 months ago