| { |
| "name": "CodonTransformer", |
| "version": "1.6.7", |
| "layout": { |
| "conf": "Repository configuration and auxiliary project files.", |
| "model": "CodonTransformer Python package and bundled model resources.", |
| "scripts": "Executable training, inference, SLURM, notebook, test, and demo files.", |
| "weight": "Local model weights and checkpoints." |
| }, |
| "entrypoints": { |
| "prepare_pretrain_data": "scripts/slurm/prepare_pretrain_data.sh", |
| "prepare_finetune_data": "scripts/slurm/prepare_finetune_data.sh", |
| "export_finetuned_model": "scripts/slurm/export_finetuned_model.sh", |
| "inference_finetuned": "scripts/slurm/run_inference_finetuned.sh", |
| "finetune": "scripts/finetune.py", |
| "pretrain": "scripts/pretrain.py", |
| "inference_single": "scripts/slurm/run_inference_single.sh", |
| "inference_multiple": "scripts/slurm/run_inference_multiple.sh", |
| "inference_batch": "scripts/slurm/run_inference_batch.sh" |
| }, |
| "resources": { |
| "tokenizer": "model/src/CodonTransformerTokenizer.json", |
| "demo_dataset": "scripts/demo/sample_dataset.csv", |
| "raw_training_data": "scripts/data/raw", |
| "processed_training_data": "scripts/data/processed", |
| "checkpoints": "weight/checkpoints" |
| } |
| } |
|
|
