| { |
| "project": "GPSite", |
| "task": "protein binding-site inference", |
| "entrypoint": "scripts/run_gpu_infer.sh", |
| "default_command": "bash scripts/run_gpu_infer.sh 0 ./conf/example/demo.fa ./results/", |
| "layout": { |
| "conf": "Datasets, examples, images, license, and archived dependency source files.", |
| "model": "GPSite fold checkpoints: fold0.ckpt to fold4.ckpt.", |
| "scripts": "Prediction, feature extraction, model definition, and run scripts.", |
| "weight": "External foundation-model weights used by ESMFold." |
| }, |
| "paths": { |
| "gpsite_root": "/public/home/scnb9biwet/jiangqq/GPSite-main", |
| "prottrans_path": "/public/home/scnb9biwet/jiangqq/UniKP-main/prot_t5_xl_uniref50", |
| "esmfold_hub_dir": "/public/home/scnb9biwet/jiangqq/GPSite-main/weight", |
| "esmfold_weight": "/public/home/scnb9biwet/jiangqq/GPSite-main/weight/checkpoints/esmfold_3B_v1.pt", |
| "esm2_weight": "/public/home/scnb9biwet/jiangqq/GPSite-main/weight/checkpoints/esm2_t36_3B_UR50D.pt", |
| "esm2_contact_regression_weight": "/public/home/scnb9biwet/jiangqq/GPSite-main/weight/checkpoints/esm2_t36_3B_UR50D-contact-regression.pt" |
| } |
| } |
|
|
