model/PXDesignBench/ColabDesign/README.md

ColabDesign

Making Protein Design accessible to all via Google Colab!

• P(structure | sequence)
  • TrDesign - using TrRosetta for design
  • AfDesign - using AlphaFold for design
  • [WIP] RfDesign - using RoseTTAFold for design
• P(sequence | structure)
  • ProteinMPNN
  • [WIP] TrMRF
• P(sequence)
  • [WIP] MSA_transformer
  • [WIP] SEQ - (GREMLIN, mfDCA, arDCA, plmDCA, bmDCA, etc)
• P(structure)
  • Rfdiffusion

Where can I chat with other ColabDesign users?

• See our Discord channel!

Presentations

Slides Talk

Contributors:

• Sergey Ovchinnikov @sokrypton
• Shihao Feng @JeffSHF
• Justas Dauparas @dauparas
• Weikun.Wu @guyujun (from Levinthal.bio)
• Christopher Frank @chris-kafka