Download results/before_text_clean/final_summary.csv from Pathstudy/fourmodal-pathology-bind: direct link, hf CLI and curl.
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- Download file 10.1 kB
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https://huggingface.co/Pathstudy/fourmodal-pathology-bind/resolve/main/results/before_text_clean/final_summary.csv
- Command line
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hf download hf://Pathstudy/fourmodal-pathology-bind/results/before_text_clean/final_summary.csv
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curl -L -o final_summary.csv https://huggingface.co/Pathstudy/fourmodal-pathology-bind/resolve/main/results/before_text_clean/final_summary.csv
10.1 kB
| ,,,,,,R@1,R@1,R@5,R@5,R@10,R@10,MRR,MRR,pair_acc,pair_acc,n_test,n_test | |
| ,,,,,,mean,std,mean,std,mean,std,mean,std,mean,std,mean,std | |
| part,dataset,split,pair,kind,circular,,,,,,,,,,,, | |
| real,HEST,group 5-fold,H&E<->RNA,trained pair,False,0.1479,0.0264,0.4095,0.0738,0.5465,0.0856,0.2768,0.0416,0.1664,0.0318,1896.8,1.7889 | |
| virtual,HEST,group 5-fold,H&E<->RNA(virtual),calibration: virtual replaces real,True,0.1263,0.0208,0.3363,0.0499,0.4581,0.0623,0.2361,0.0312,0.1816,0.0492,1896.8,1.7889 | |
| virtual,HEST,group 5-fold,RNA<->RNA(virtual),calibration: real vs virtual,False,0.1183,0.0158,0.3216,0.0367,0.4392,0.0494,0.2257,0.0241,0.1523,0.0214,1896.8,1.7889 | |
| real,HEST (STPath-unseen test spots),group 5-fold,H&E<->RNA,trained pair,False,0.0864,0.038,0.3209,0.0695,0.5091,0.0846,0.2143,0.0478,0.1104,0.0375,330.4,189.3127 | |
| virtual,HEST (STPath-unseen test spots),group 5-fold,H&E<->RNA(virtual),calibration: virtual replaces real,True,0.0799,0.0164,0.2726,0.0432,0.4312,0.0424,0.1909,0.0245,0.136,0.0303,330.4,189.3127 | |
| virtual,HEST (STPath-unseen test spots),group 5-fold,RNA<->RNA(virtual),calibration: real vs virtual,False,0.0465,0.0111,0.1863,0.014,0.2999,0.0156,0.1331,0.0098,0.0613,0.0086,330.4,189.3127 | |
| real,ORION,patient 5-fold,"H&E<->mIF (17-ch full ORION panel, reference)",trained pair,False,0.7264,0.0305,0.9619,0.0141,0.9885,0.0067,0.8281,0.0231,0.9349,0.0297,637.4,83.5482 | |
| real,ORION,patient 5-fold,H&E<->mIF,trained pair,False,0.6439,0.0345,0.9313,0.0217,0.9795,0.0097,0.7673,0.0284,0.8627,0.0495,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF<->RNA(virtual),emergent: real x virtual,False,0.0985,0.0074,0.3359,0.0266,0.4953,0.0308,0.2222,0.0135,0.1309,0.0222,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF<->text(synthetic),emergent: real x virtual,False,0.0743,0.0047,0.2744,0.0152,0.434,0.0209,0.1862,0.0085,0.0709,0.0049,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,H&E<->RNA(virtual),virtual from this H&E,True,0.1028,0.0071,0.3504,0.0196,0.5177,0.0277,0.2301,0.0092,0.1917,0.0401,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,H&E<->text(synthetic),virtual from this H&E,True,0.0749,0.0064,0.2718,0.0148,0.439,0.0184,0.1873,0.0071,0.1012,0.0129,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,RNA(virtual)<->text(synthetic),emergent: virtual x virtual,True,0.0468,0.0076,0.1985,0.0303,0.3426,0.0451,0.1412,0.0158,0.0584,0.0087,637.4,83.5482 | |
| real,ORION,patient 5-fold,H&E<->mIF (16-ch MIPHEI panel),trained pair,False,0.6889,0.0368,0.946,0.0212,0.9837,0.0099,0.7999,0.0295,0.9014,0.0382,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF(16ch)<->RNA(virtual),emergent: real x virtual,False,0.108,0.0103,0.3573,0.0187,0.5125,0.0167,0.2357,0.0123,0.1491,0.016,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF(16ch)<->text(synthetic),emergent: real x virtual,False,0.0738,0.0108,0.2794,0.0208,0.4411,0.0278,0.1879,0.0142,0.077,0.0088,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,H&E<->mIF(MIPHEI) [MIPHEI-seen tiles],calibration: virtual replaces real,True,0.255,0.0248,0.5723,0.0344,0.7224,0.0236,0.4042,0.0255,0.5086,0.0546,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF<->mIF(MIPHEI) [MIPHEI-seen tiles],calibration: real vs virtual,False,0.3793,0.0305,0.6645,0.0317,0.7617,0.0262,0.511,0.0288,0.6687,0.0424,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF(MIPHEI)<->RNA(virtual) [MIPHEI-seen tiles],emergent: virtual x virtual,True,0.0565,0.0088,0.2146,0.0299,0.3522,0.038,0.1511,0.0161,0.0926,0.0258,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF(MIPHEI)<->text(synthetic) [MIPHEI-seen tiles],emergent: virtual x virtual,True,0.0492,0.0068,0.192,0.0295,0.3136,0.0417,0.1383,0.0166,0.0581,0.0083,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,H&E<->mIF(virtual),calibration: virtual replaces real,True,0.038,0.006,0.1549,0.0153,0.2641,0.021,0.1162,0.009,0.046,0.006,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF<->mIF(virtual),calibration: real vs virtual,False,0.045,0.0079,0.1571,0.017,0.2477,0.0307,0.1184,0.0111,0.0536,0.009,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF(virtual)<->RNA(virtual),emergent: virtual x virtual,True,0.0205,0.007,0.0932,0.0277,0.1738,0.0447,0.0792,0.0157,0.019,0.0067,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF(virtual)<->text(synthetic),emergent: virtual x virtual,True,0.0241,0.0028,0.1049,0.0116,0.1896,0.0195,0.0871,0.0075,0.0251,0.0022,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,H&E<->mIF(virtual) [qm],calibration: virtual replaces real,True,0.0423,0.0049,0.1641,0.0156,0.2783,0.0302,0.1228,0.008,0.0469,0.0041,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF<->mIF(virtual) [qm],calibration: real vs virtual,False,0.0522,0.0066,0.185,0.0146,0.3014,0.0171,0.1359,0.0099,0.0604,0.0102,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF(virtual) [qm]<->RNA(virtual),emergent: virtual x virtual,True,0.0173,0.0033,0.0857,0.0183,0.1671,0.037,0.0749,0.0109,0.0164,0.0035,637.4,83.5482 | |
| virtual,ORION,patient 5-fold,mIF(virtual) [qm]<->text(synthetic),emergent: virtual x virtual,True,0.0224,0.0064,0.0976,0.015,0.1815,0.0223,0.0828,0.0098,0.0207,0.0071,637.4,83.5482 | |
| real,ORION,official,"H&E<->mIF (17-ch full ORION panel, reference)",trained pair,False,0.6654,,0.9739,,1.0,,0.7913,,0.9484,,109.0, | |
| real,ORION,official,H&E<->mIF,trained pair,False,0.6549,,0.9499,,0.9899,,0.7769,,0.976,,109.0, | |
| virtual,ORION,official,mIF<->RNA(virtual),emergent: real x virtual,False,0.0922,,0.2965,,0.4698,,0.2074,,0.1516,,109.0, | |
| virtual,ORION,official,mIF<->text(synthetic),emergent: real x virtual,False,0.0746,,0.2898,,0.4402,,0.1848,,0.0968,,109.0, | |
| virtual,ORION,official,H&E<->RNA(virtual),virtual from this H&E,True,0.0802,,0.3441,,0.5594,,0.214,,0.16,,109.0, | |
| virtual,ORION,official,H&E<->text(synthetic),virtual from this H&E,True,0.0782,,0.2432,,0.4242,,0.1833,,0.0778,,109.0, | |
| virtual,ORION,official,RNA(virtual)<->text(synthetic),emergent: virtual x virtual,True,0.057,,0.2029,,0.3149,,0.1422,,0.0628,,109.0, | |
| real,ORION,official,H&E<->mIF (16-ch MIPHEI panel),trained pair,False,0.5909,,0.9508,,0.9907,,0.7358,,0.921,,109.0, | |
| virtual,ORION,official,mIF(16ch)<->RNA(virtual),emergent: real x virtual,False,0.1013,,0.2709,,0.4661,,0.2076,,0.1228,,109.0, | |
| virtual,ORION,official,mIF(16ch)<->text(synthetic),emergent: real x virtual,False,0.0422,,0.266,,0.4151,,0.1594,,0.0724,,109.0, | |
| virtual,ORION,official,H&E<->mIF(MIPHEI),calibration: virtual replaces real,True,0.1889,,0.5879,,0.7836,,0.3644,,0.5528,,109.0, | |
| virtual,ORION,official,mIF<->mIF(MIPHEI),calibration: real vs virtual,False,0.2968,,0.6663,,0.8,,0.4536,,0.5864,,109.0, | |
| virtual,ORION,official,mIF(MIPHEI)<->RNA(virtual),emergent: virtual x virtual,True,0.0415,,0.2049,,0.3111,,0.1416,,0.0778,,109.0, | |
| virtual,ORION,official,mIF(MIPHEI)<->text(synthetic),emergent: virtual x virtual,True,0.0497,,0.2158,,0.396,,0.154,,0.0508,,109.0, | |
| virtual,ORION,official,H&E<->mIF(virtual),calibration: virtual replaces real,True,0.0125,,0.1131,,0.2131,,0.0881,,0.004,,109.0, | |
| virtual,ORION,official,mIF<->mIF(virtual),calibration: real vs virtual,False,0.0494,,0.1603,,0.2608,,0.1256,,0.0548,,109.0, | |
| virtual,ORION,official,mIF(virtual)<->RNA(virtual),emergent: virtual x virtual,True,0.0148,,0.0637,,0.1354,,0.0618,,0.0184,,109.0, | |
| virtual,ORION,official,mIF(virtual)<->text(synthetic),emergent: virtual x virtual,True,0.0328,,0.1113,,0.236,,0.1031,,0.025,,109.0, | |
| real,TCGA,patient 5-fold,H&E<->text,trained pair,False,0.2291,0.0107,0.5657,0.0137,0.6997,0.0151,0.3829,0.0091,0.2381,0.0114,1228.8,0.4472 | |
| virtual,TCGA,patient 5-fold,text<->RNA(virtual),emergent: real x virtual,False,0.0551,0.0087,0.2,0.0197,0.3178,0.0193,0.1441,0.0125,0.0583,0.0096,1228.8,0.4472 | |
| virtual,TCGA,patient 5-fold,H&E<->RNA(virtual),virtual from this H&E,True,0.1197,0.0161,0.3183,0.037,0.4474,0.0465,0.2277,0.0244,0.1755,0.0226,1228.8,0.4472 | |
| virtual,TCGA,patient 5-fold,text<->mIF(MIPHEI),emergent: real x virtual,False,0.0334,0.0033,0.134,0.0168,0.2311,0.0253,0.104,0.0082,0.0363,0.0041,1228.8,0.4472 | |
| virtual,TCGA,patient 5-fold,H&E<->mIF(MIPHEI),virtual from this H&E,True,0.1326,0.0144,0.3299,0.0186,0.4553,0.0207,0.2402,0.0153,0.2128,0.0194,1228.8,0.4472 | |
| virtual,TCGA,patient 5-fold,RNA(virtual)<->mIF(MIPHEI),emergent: virtual x virtual,True,0.0354,0.0037,0.1311,0.0138,0.2184,0.0234,0.1028,0.0079,0.04,0.0038,1228.8,0.4472 | |
| virtual,TCGA,patient 5-fold,text<->mIF(virtual),emergent: real x virtual,False,0.0146,0.0025,0.0688,0.0061,0.1327,0.0091,0.0638,0.0038,0.0137,0.0039,1228.8,0.4472 | |
| virtual,TCGA,patient 5-fold,H&E<->mIF(virtual),virtual from this H&E,True,0.0196,0.0009,0.0854,0.0102,0.1566,0.0141,0.074,0.0037,0.0242,0.0038,1228.8,0.4472 | |
| virtual,TCGA,patient 5-fold,RNA(virtual)<->mIF(virtual),emergent: virtual x virtual,True,0.0146,0.0018,0.066,0.0081,0.1246,0.0119,0.0624,0.0043,0.0145,0.0026,1228.8,0.4472 | |
| virtual,TCGA,patient 5-fold,text<->mIF(virtual) [qm],emergent: real x virtual,False,0.0157,0.0021,0.0724,0.005,0.1375,0.0071,0.0658,0.0035,0.016,0.002,1228.8,0.4472 | |
| virtual,TCGA,patient 5-fold,H&E<->mIF(virtual) [qm],virtual from this H&E,True,0.0248,0.0013,0.097,0.0021,0.1739,0.0041,0.0817,0.0014,0.0309,0.0035,1228.8,0.4472 | |
| virtual,TCGA,patient 5-fold,RNA(virtual)<->mIF(virtual) [qm],emergent: virtual x virtual,True,0.0126,0.0009,0.0655,0.0061,0.1235,0.0099,0.0603,0.0026,0.0135,0.0011,1228.8,0.4472 | |
| real,TCGA (test images with GPT caption),patient 5-fold,H&E<->text,trained pair,False,0.1975,0.0192,0.52,0.0315,0.6561,0.0193,0.345,0.0214,0.2024,0.0261,200.0,17.5071 | |
| virtual,TCGA (test images with GPT caption),patient 5-fold,H&E<->text(synthetic),calibration: virtual replaces real,True,0.1659,0.0209,0.4216,0.0417,0.5642,0.04,0.2953,0.0249,0.1798,0.0395,200.0,17.5071 | |
| virtual,TCGA (test images with GPT caption),patient 5-fold,text<->text(synthetic),calibration: real vs virtual,False,0.0935,0.0135,0.2746,0.0358,0.3916,0.0451,0.1925,0.0203,0.0835,0.0154,200.0,17.5071 | |
| virtual,TCGA (test images with GPT caption),patient 5-fold,text<->RNA(virtual),emergent: real x virtual,False,0.0453,0.0082,0.1768,0.0268,0.283,0.0296,0.1295,0.0147,0.0443,0.0142,200.0,17.5071 | |
| virtual,TCGA (test images with GPT caption),patient 5-fold,text(synthetic)<->RNA(virtual),emergent: virtual x virtual,True,0.0559,0.0125,0.1807,0.0253,0.2989,0.0176,0.1375,0.0162,0.0507,0.0083,200.0,17.5071 | |