| { | |
| "n_tiles": 3187, | |
| "n_slides": 41, | |
| "n_patients": 40, | |
| "official_split_tiles": { | |
| "train": 2954, | |
| "val": 124, | |
| "test": 109 | |
| }, | |
| "official_split_slides": { | |
| "test": 2, | |
| "train": 37, | |
| "val": 2 | |
| }, | |
| "if_batches_tiles": { | |
| "C59mX": 919, | |
| "C59qX": 830, | |
| "C59nX": 781, | |
| "C59kX": 657 | |
| }, | |
| "if_batches_patients": { | |
| "C59kX": 9, | |
| "C59mX": 10, | |
| "C59nX": 11, | |
| "C59qX": 10 | |
| }, | |
| "tiles_per_slide": { | |
| "count": 41.0, | |
| "mean": 77.7, | |
| "std": 27.8, | |
| "min": 30.0, | |
| "25%": 61.0, | |
| "50%": 74.0, | |
| "75%": 94.0, | |
| "max": 138.0 | |
| }, | |
| "shapes": { | |
| "he": [ | |
| 333, | |
| 333, | |
| 3 | |
| ], | |
| "if": [ | |
| 333, | |
| 333, | |
| 17 | |
| ], | |
| "nuclei": [ | |
| 333, | |
| 333 | |
| ], | |
| "markers": 33 | |
| }, | |
| "if_channel_names_from_prop_cols": [ | |
| "Hoechst", | |
| "CD31", | |
| "CD45", | |
| "CD68", | |
| "CD4", | |
| "FOXP3", | |
| "CD8a", | |
| "CD45RO", | |
| "CD20", | |
| "PD-L1", | |
| "CD3e", | |
| "CD163", | |
| "E-cadherin", | |
| "PD-1", | |
| "Ki67", | |
| "Pan-CK", | |
| "SMA" | |
| ], | |
| "n_nuclei_per_tile": { | |
| "count": 3187.0, | |
| "mean": 161.0, | |
| "std": 125.7, | |
| "min": 0.0, | |
| "25%": 55.5, | |
| "50%": 138.0, | |
| "75%": 248.5, | |
| "max": 716.0 | |
| }, | |
| "frac_tiles_lt20_nuclei": 0.11797929086915594, | |
| "he_mean_vs_n_nuclei_spearman": -0.7460299808394185, | |
| "marker_prop_mean": { | |
| "Hoechst_prop": 0.4281, | |
| "CD31_prop": 0.0124, | |
| "CD45_prop": 0.256, | |
| "CD68_prop": 0.0599, | |
| "CD4_prop": 0.1231, | |
| "FOXP3_prop": 0.0057, | |
| "CD8a_prop": 0.0286, | |
| "CD45RO_prop": 0.0787, | |
| "CD20_prop": 0.0257, | |
| "PD-L1_prop": 0.0583, | |
| "CD3e_prop": 0.0618, | |
| "CD163_prop": 0.0576, | |
| "E-cadherin_prop": 0.1906, | |
| "PD-1_prop": 1.0, | |
| "Ki67_prop": 0.0417, | |
| "Pan-CK_prop": 0.2436, | |
| "SMA_prop": 0.1104 | |
| }, | |
| "marker_count_mean": { | |
| "CD31_count": 4.39, | |
| "CD45_count": 74.46, | |
| "CD68_count": 13.49, | |
| "CD4_count": 36.15, | |
| "FOXP3_count": 4.47, | |
| "CD8a_count": 11.01, | |
| "CD45RO_count": 29.72, | |
| "CD20_count": 12.06, | |
| "PD-L1_count": 13.95, | |
| "CD3e_count": 41.11, | |
| "CD163_count": 13.13, | |
| "E-cadherin_count": 47.45, | |
| "PD-1_count": 17.29, | |
| "Ki67_count": 23.76, | |
| "Pan-CK_count": 52.44, | |
| "SMA_count": 13.18 | |
| }, | |
| "if_channel_mean_intensity": { | |
| "Hoechst": 21.51, | |
| "CD31": 0.4, | |
| "CD45": 9.22, | |
| "CD68": 1.55, | |
| "CD4": 3.45, | |
| "FOXP3": 0.14, | |
| "CD8a": 0.88, | |
| "CD45RO": 2.49, | |
| "CD20": 0.82, | |
| "PD-L1": 2.08, | |
| "CD3e": 2.45, | |
| "CD163": 1.51, | |
| "E-cadherin": 7.26, | |
| "PD-1": 105.61, | |
| "Ki67": 1.37, | |
| "Pan-CK": 8.59, | |
| "SMA": 3.21 | |
| } | |
| } |