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NOTE: We are heavily revamping PSALM. Current progress at the GitHub repo
Cite
If you find PSALM useful in your research, please cite the following paper:
@article {sarkarkrishnan2024psalm,
author = {Sarkar, Arpan and Krishnan, Kumaresh and Eddy, Sean R},
title = {Protein Sequence Domain Annotation using Language Models},
year = {2024},
URL = {https://www.biorxiv.org/content/10.1101/2024.06.04.596712v2},
journal = {bioRxiv}
}
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ProteinSequenceAnnotation/esm2_t33_650M_PFS90_clean
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ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky
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ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky10x
0.7B • Updated • 245k -
ProteinSequenceAnnotation/esm2_t33_650M_UR50_190K_steps
0.7B • Updated • 1.23M
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ProteinSequenceAnnotation/esm2_t33_650M_PFS90_clean
0.7B • Updated • 7 -
ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky
0.7B • Updated • 5 -
ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky10x
0.7B • Updated • 245k -
ProteinSequenceAnnotation/esm2_t33_650M_UR50_190K_steps
0.7B • Updated • 1.23M
models 10
ProteinSequenceAnnotation/esm2_t33_650M_UR50_190K_steps
0.7B • Updated
• 1.23M
ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky10x
0.7B • Updated
• 245k
ProteinSequenceAnnotation/PSALM-2-seed
Updated
• 2
ProteinSequenceAnnotation/PSALM-2
Updated
• 14
ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky
0.7B • Updated
• 5
ProteinSequenceAnnotation/esm2_t33_650M_PFS90_clean
0.7B • Updated
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ProteinSequenceAnnotation/PSALM-1b-family
Updated
• 67
ProteinSequenceAnnotation/PSALM-1b-clan
Updated
• 58
ProteinSequenceAnnotation/PSALM-1-family
Token Classification • Updated
• 6
ProteinSequenceAnnotation/PSALM-1-clan
Token Classification • Updated
• 6
datasets 0
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