| | --- |
| | license: mit |
| | --- |
| | |
| | **Base model:** [westlake-repl/SaProt_650M_AF2](https://huggingface.co/westlake-repl/SaProt_650M_AF2) |
| |
|
| | **Task type:** protein-level regression |
| |
|
| | **Dataset:** This dataset contains over 100K mutants derived from the wild type EYFP protein. The number of samples for |
| | training, validation and test is 100317, 5969 and 5968. 10% of double-site mutants and 10% of triple-site mutants were used for validation and test |
| | respectively, and the remains for training. This model was trained by Jia Zheng's lab at Westlake University. The dataset will be released later by this team. |
| |
|
| | **Model input type:** Amino acid sequence |
| |
|
| | **Performance (on test set):** 0.94 Spearman's ρ |
| |
|
| | **LoRA config:** |
| | - **r:** 8 |
| | - **lora_dropout:** 0.0 |
| | - **lora_alpha:** 16 |
| | - **target_modules:** ["query", "key", "value", "intermediate.dense", "output.dense"] |
| | - **modules_to_save:** ["classifier"] |
| | |
| | **Training config:** |
| | |
| | - **optimizer:** |
| | - **class:** AdamW |
| | - **betas:** (0.9, 0.98) |
| | - **weight_decay:** 0.01 |
| | - **learning rate:** 1e-4 |
| | - **epoch:** 20 |
| | - **batch size:** 64 |
| | - **precision:** 16-mixed |
