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Seyomi
/
synthguard-kmer
like
0
Seyomi/synthscreen-dataset
English
biosecurity
dna
protein
lightgbm
kmer
sequence-classification
synthguard
codon-usage
License:
apache-2.0
Model card
Files
Files and versions
xet
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synthguard-kmer
13.4 MB
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1 contributor
History:
16 commits
Seyomi
Update model card: verified April 26 2026 blastn benchmarks, correct 5533 features, real OOD results
812e049
verified
4 months ago
.gitattributes
Safe
1.52 kB
initial commit
4 months ago
README.md
Safe
17.7 kB
Update model card: verified April 26 2026 blastn benchmarks, correct 5533 features, real OOD results
4 months ago
general_model.pkl
pickle
Detected Pickle imports (12)
"lightgbm.basic.Booster"
,
"lightgbm.sklearn.LGBMClassifier"
,
"numpy.ndarray"
,
"sklearn.calibration.CalibratedClassifierCV"
,
"numpy.dtype"
,
"collections.defaultdict"
,
"numpy._core.multiarray._reconstruct"
,
"sklearn.calibration._CalibratedClassifier"
,
"collections.OrderedDict"
,
"numpy._core.multiarray.scalar"
,
"sklearn.preprocessing._label.LabelEncoder"
,
"sklearn.calibration._SigmoidCalibration"
How to fix it?
2.58 MB
xet
v4 final: recall=91.8%, short-seq=79.7%, AUROC=0.977
4 months ago
meta.json
Safe
92.3 kB
v2: add codon-usage normalization features (RSCU+CAI+AA)
4 months ago
protein_kmer_model.pkl
pickle
Detected Pickle imports (9)
"collections.defaultdict"
,
"sklearn.preprocessing._label.LabelEncoder"
,
"lightgbm.sklearn.LGBMClassifier"
,
"collections.OrderedDict"
,
"lightgbm.basic.Booster"
,
"numpy._core.multiarray._reconstruct"
,
"numpy.dtype"
,
"numpy.ndarray"
,
"numpy._core.multiarray.scalar"
How to fix it?
2.78 MB
xet
Retrain protein k-mer with ProteinMPNN variants; holdout BoNT+Diphtheria
4 months ago
protein_kmer_v3_esm2.pkl
pickle
Detected Pickle imports (9)
"collections.defaultdict"
,
"numpy._core.multiarray.scalar"
,
"numpy.ndarray"
,
"lightgbm.basic.Booster"
,
"numpy._core.multiarray._reconstruct"
,
"collections.OrderedDict"
,
"lightgbm.sklearn.LGBMClassifier"
,
"sklearn.preprocessing._label.LabelEncoder"
,
"numpy.dtype"
How to fix it?
3.65 MB
xet
Upload protein_kmer_v3_esm2.pkl with huggingface_hub
4 months ago
protein_kmer_v4_esm2.pkl
pickle
Detected Pickle imports (9)
"lightgbm.basic.Booster"
,
"lightgbm.sklearn.LGBMClassifier"
,
"numpy.ndarray"
,
"numpy.dtype"
,
"collections.defaultdict"
,
"numpy._core.multiarray._reconstruct"
,
"collections.OrderedDict"
,
"numpy._core.multiarray.scalar"
,
"sklearn.preprocessing._label.LabelEncoder"
How to fix it?
3.25 MB
xet
Upload protein_kmer_v4_esm2.pkl with huggingface_hub
4 months ago
short_model.pkl
pickle
Detected Pickle imports (12)
"collections.defaultdict"
,
"sklearn.calibration.CalibratedClassifierCV"
,
"sklearn.calibration._SigmoidCalibration"
,
"lightgbm.basic.Booster"
,
"numpy._core.multiarray._reconstruct"
,
"collections.OrderedDict"
,
"sklearn.preprocessing._label.LabelEncoder"
,
"numpy.ndarray"
,
"sklearn.calibration._CalibratedClassifier"
,
"lightgbm.sklearn.LGBMClassifier"
,
"numpy.dtype"
,
"numpy._core.multiarray.scalar"
How to fix it?
1.06 MB
xet
v4 final: recall=91.8%, short-seq=79.7%, AUROC=0.977
4 months ago
