17.4 GB

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Fix leflur-ted: re-upload correct TED-CATH ss-balanced ckpt (md5 cc5c54b3); previous blob was the unrelated denovo snapshot (md5 fca4ed5e) which regressed CAMEO forward folding TM by ~0.08

78e6f92 verified about 2 months ago

.gitattributes

1.52 kB
initial commit about 2 months ago
leflur_denovo_last_ckpt_2026-03-11T12-11-53.ckpt
Detected Pickle imports (14)
- "collections.defaultdict",
- "omegaconf.base.Metadata",
- "collections.OrderedDict",
- "omegaconf.base.ContainerMetadata",
- "torch.FloatStorage",
- "omegaconf.nodes.AnyNode",
- "typing.Any",
- "bionemo.moco.distributions.prior.discrete.uniform.DiscreteUniformPrior",
- "__builtin__.dict",
- "bionemo.moco.schedules.inference_time_schedules.LinearInferenceSchedule",
- "bionemo.moco.interpolants.continuous_time.discrete.discrete_flow_matching.DiscreteFlowMatcher",
- "bionemo.moco.distributions.time.uniform.UniformTimeDistribution",
- "omegaconf.dictconfig.DictConfig",
- "torch._utils._rebuild_tensor_v2"
How to fix it?
5.73 GB
xet

Upload leflur-base (gen_ume_denovo_last_2026-03-08T17-09-23_2026-03-11T12-11-53.ckpt) about 2 months ago
leflur_denovo_ted_cath_ss_balanced_ckpt_2026-03-18T12-20-59.ckpt
Detected Pickle imports (14)
- "typing.Any",
- "omegaconf.base.ContainerMetadata",
- "torch._utils._rebuild_tensor_v2",
- "omegaconf.dictconfig.DictConfig",
- "collections.defaultdict",
- "omegaconf.nodes.AnyNode",
- "bionemo.moco.interpolants.continuous_time.discrete.discrete_flow_matching.DiscreteFlowMatcher",
- "omegaconf.base.Metadata",
- "bionemo.moco.distributions.time.uniform.UniformTimeDistribution",
- "bionemo.moco.distributions.prior.discrete.uniform.DiscreteUniformPrior",
- "bionemo.moco.schedules.inference_time_schedules.LinearInferenceSchedule",
- "__builtin__.dict",
- "collections.OrderedDict",
- "torch.FloatStorage"
How to fix it?
5.73 GB
xet

Fix leflur-ted: re-upload correct TED-CATH ss-balanced ckpt (md5 cc5c54b3); previous blob was the unrelated denovo snapshot (md5 fca4ed5e) which regressed CAMEO forward folding TM by ~0.08 about 2 months ago
leflur_protein_ligand.ckpt
Detected Pickle imports (15)
- "omegaconf.base.ContainerMetadata",
- "collections.defaultdict",
- "bionemo.moco.distributions.prior.discrete.uniform.DiscreteUniformPrior",
- "typing.Any",
- "bionemo.moco.distributions.time.uniform.UniformTimeDistribution",
- "torch.FloatStorage",
- "bionemo.moco.schedules.inference_time_schedules.LinearInferenceSchedule",
- "torch._utils._rebuild_tensor_v2",
- "__builtin__.dict",
- "omegaconf.dictconfig.DictConfig",
- "collections.OrderedDict",
- "torch.LongStorage",
- "omegaconf.nodes.AnyNode",
- "omegaconf.base.Metadata",
- "bionemo.moco.interpolants.continuous_time.discrete.discrete_flow_matching.DiscreteFlowMatcher"
How to fix it?
5.93 GB
xet

Repoint leflur-pl to no_geom_medium 3/11 (reproduces PoseBusters NO inverse-folding AAR ~0.70) about 2 months ago

Detected Pickle imports (14)

Detected Pickle imports (14)

Detected Pickle imports (15)