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PLANT

PLANT is a protein language model-based antigenic cartography model for seasonal influenza A/H3N2 viruses.

How to use

Please check the github repository: https://github.com/TheSatoLab/PLANT

Google Colab notebook

A Colab notebook for embedding your sequences of interest onto the antigenic map constructed by the full model is available at the following link:
Open In Colab

Variants

  • Original PLANT (v1.0): the original model used in the bioRxiv paper.
  • PLANT_fixed (v1.1): fixed version with improved performance

Changelog

Variants

  • Original PLANT (v1.0): the original model used in the bioRxiv paper
  • PLANT_fixed (v1.1): fixed version with improved performance. Please use the model under variants/PLANT_fixed/

License

MIT License

Citation

Integrative modeling of seasonal influenza evolution via AI-powered antigenic cartography Jumpei Ito, Shusuke Kawakubo, Hiroaki Unno, Adam Strange, Spyros Lytras, Kaho Okumura, Alice Lilley, Ruth Harvey, Nicola Lewis, Kei Sato bioRxiv 2025.08.04.668423; doi: https://doi.org/10.1101/2025.08.04.668423

Contact

jampei@g.ecc.u-tokyo.ac.jp (Jumpei Ito)