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1 Parent(s): 1904b10

Update ParameterMap_MRI_TS.txt

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  1. ParameterMap_MRI_TS.txt +138 -138
ParameterMap_MRI_TS.txt CHANGED
@@ -1,138 +1,138 @@
1
- (MaximumNumberOfIterations 400 300 200 200)
2
- (NumberOfSpatialSamples 2000)
3
- (Transform "RecursiveBSplineTransform")
4
- (NumberOfResolutions 4)
5
- (FinalGridSpacingInPhysicalUnits 14)
6
- (FixedImagePyramid "FixedGenericImagePyramid")
7
- (MovingImagePyramid "MovingGenericImagePyramid")
8
- (FixedImagePyramidRescaleSchedule 1 1 1 1 1 1 1 1 1 1 1 1)
9
- (MovingImagePyramidRescaleSchedule 1 1 1 1 1 1 1 1 1 1 1 1)
10
- // (GridSpacingSchedule 10.000000 5.000000 2.000000 1.000000)
11
-
12
-
13
- (ImpactModelsPath0 "/Data/Model/MIND/R1D2.pt" "/Data/Model/TS/M852_8_Layers.pt")
14
- (ImpactDimension0 3 3)
15
- (ImpactNumberOfChannels0 1 1)
16
- (ImpactPatchSize0 0 0 0 0 0 0)
17
- (ImpactVoxelSize0 6 6 6 6 6 6)
18
- (ImpactLayersMask0 "1" "00000001")
19
- (ImpactSubsetFeatures0 32 64)
20
- (ImpactPCA0 0 0)
21
- (ImpactDistance0 "L1" "Dice")
22
- (ImpactLayersWeight0 0.2 0.8)
23
-
24
- (ImpactModelsPath1 "/Data/Model/MIND/R1D2.pt" "/Data/Model/TS/M852_8_Layers.pt")
25
- (ImpactDimension1 3 3)
26
- (ImpactNumberOfChannels1 1 1)
27
- (ImpactPatchSize1 0 0 0 0 0 0)
28
- (ImpactVoxelSize1 3 3 3 3 3 3)
29
- (ImpactLayersMask1 "1" "00000001")
30
- (ImpactSubsetFeatures1 32 64)
31
- (ImpactPCA1 0 0)
32
- (ImpactDistance1 "L1" "Dice")
33
- (ImpactLayersWeight1 0.3 0.7)
34
-
35
- (ImpactModelsPath2 "/Data/Model/MIND/R1D2.pt" "/Data/Model/TS/M850_8_Layers.pt")
36
- (ImpactDimension2 3 3)
37
- (ImpactNumberOfChannels2 1 1)
38
- (ImpactPatchSize2 0 0 0 0 0 0)
39
- (ImpactVoxelSize2 2 2 2 2 2 2)
40
- (ImpactLayersMask2 "1" "00000001")
41
- (ImpactSubsetFeatures2 32 64)
42
- (ImpactPCA2 0 0)
43
- (ImpactDistance2 "L1" "Dice")
44
- (ImpactLayersWeight2 0.6 0.4)
45
-
46
- (ImpactModelsPath3 "/Data/Model/MIND/R1D2.pt" "/Data/Model/TS/M850_8_Layers.pt")
47
- (ImpactDimension3 3 3)
48
- (ImpactNumberOfChannels3 1 1)
49
- (ImpactPatchSize3 0 0 0 0 0 0)
50
- (ImpactVoxelSize3 2 2 2 2 2 2)
51
- (ImpactLayersMask3 "1" "00000001")
52
- (ImpactSubsetFeatures3 32 64)
53
- (ImpactPCA3 0 0)
54
- (ImpactDistance3 "L1" "Dice")
55
- (ImpactLayersWeight3 0.7 0.3)
56
-
57
-
58
- (ImpactUseMixedPrecision "true")
59
- (ImpactFeaturesMapUpdateInterval -1)
60
- (ImpactWriteFeatureMaps "false")
61
- (ImpactMode "Static")
62
- (ImpactGPU 0)
63
-
64
-
65
- (Metric "Impact" "AdvancedMattesMutualInformation" "TransformBendingEnergyPenalty")
66
- (Metric0Weight 1)
67
- (Metric1Weight 0.4)
68
- (Metric2Weight 10)
69
-
70
- // imageTypes
71
- (FixedInternalImagePixelType "float")
72
- (MovingInternalImagePixelType "float")
73
- (UseDirectionCosines "true")
74
-
75
- // components
76
- (Registration "MultiMetricMultiResolutionRegistration")
77
- (BSplineTransformSplineOrder 3)
78
- (UseCyclicTransform "false")
79
-
80
- // transform
81
- (AutomaticTransformInitialization "false")
82
- (AutomaticTransformInitializationMethod "GeometricalCenter")
83
- (AutomaticScalesEstimation "true")
84
- (HowToCombineTransforms "Compose")
85
-
86
-
87
- // optimizer
88
- (Optimizer "AdaptiveStochasticGradientDescent")
89
- (MaximumNumberOfSamplingAttempts 8)
90
- (UseAdaptiveStepSizes "true")
91
- (UseMultiThreadingForMetrics "true")
92
- (ASGDParameterEstimationMethod "DisplacementDistribution")
93
- //(MaximumStepLength 0.6602)
94
- (SigmoidInitialTime 0.0)
95
- (NoiseCompensation "true")
96
- (NumberOfSamplesForExactGradient 4096)
97
-
98
- // automatic
99
- (AutomaticParameterEstimation "true")
100
- //(SP_alpha 1)
101
- //(SP_A 20.0)
102
- //(SP a 400)
103
- //(SigmoidMax 1.0)
104
- //(SigmoidMin -0.8)
105
- //(SigmoidScale 0.00000001)
106
- //(NumberOfGradientMeasurements 10)
107
- //(NumberOfJacobianMeasurements 1000)
108
-
109
- (FixedKernelBSplineOrder 3)
110
- (MovingKernelBSplineOrder 3)
111
- (CheckNumberOfSamples "true")
112
- (UseRelativeWeights "false")
113
-
114
-
115
- // several
116
- (WriteTransformParametersEachIteration "false")
117
- (WriteTransformParametersEachResolution "false")
118
- (ShowExactMetricValue "false")
119
- (ErodeFixedMask "false")
120
- (ErodeMovingMask "false")
121
- (UseBinaryFormatForTransformationParameters "false")
122
-
123
- // imageSampler
124
- (Interpolator "BSplineInterpolator")
125
- (ImageSampler "RandomCoordinate")
126
- (NewSamplesEveryIteration "true")
127
- (UseRandomSampleRegion "false")
128
-
129
-
130
- // interpolator and resampler
131
- (ResampleInterpolator "FinalBSplineInterpolator")
132
- (FinalBSplineInterpolationOrder 3)
133
- (BSplineInterpolationOrder 3)
134
- (Resampler "DefaultResampler")
135
- (WriteIterationInfo "false")
136
- (WriteResultImage "false")
137
- (DefaultPixelValue 0)
138
- (ResultImageFormat "nii.gz")
 
1
+ (MaximumNumberOfIterations 400 300 200 200)
2
+ (NumberOfSpatialSamples 2000)
3
+ (Transform "RecursiveBSplineTransform")
4
+ (NumberOfResolutions 4)
5
+ (FinalGridSpacingInPhysicalUnits 14)
6
+ (FixedImagePyramid "FixedGenericImagePyramid")
7
+ (MovingImagePyramid "MovingGenericImagePyramid")
8
+ (FixedImagePyramidRescaleSchedule 1 1 1 1 1 1 1 1 1 1 1 1)
9
+ (MovingImagePyramidRescaleSchedule 1 1 1 1 1 1 1 1 1 1 1 1)
10
+ // (GridSpacingSchedule 10.000000 5.000000 2.000000 1.000000)
11
+
12
+
13
+ (ImpactModelsPath0 "MIND/R1D2.pt" "TS/M852_8_Layers.pt")
14
+ (ImpactDimension0 3 3)
15
+ (ImpactNumberOfChannels0 1 1)
16
+ (ImpactPatchSize0 0 0 0 0 0 0)
17
+ (ImpactVoxelSize0 6 6 6 6 6 6)
18
+ (ImpactLayersMask0 "1" "00000001")
19
+ (ImpactSubsetFeatures0 32 64)
20
+ (ImpactPCA0 0 0)
21
+ (ImpactDistance0 "L1" "Dice")
22
+ (ImpactLayersWeight0 0.2 0.8)
23
+
24
+ (ImpactModelsPath1 "/MIND/R1D2.pt" "TS/M852_8_Layers.pt")
25
+ (ImpactDimension1 3 3)
26
+ (ImpactNumberOfChannels1 1 1)
27
+ (ImpactPatchSize1 0 0 0 0 0 0)
28
+ (ImpactVoxelSize1 3 3 3 3 3 3)
29
+ (ImpactLayersMask1 "1" "00000001")
30
+ (ImpactSubsetFeatures1 32 64)
31
+ (ImpactPCA1 0 0)
32
+ (ImpactDistance1 "L1" "Dice")
33
+ (ImpactLayersWeight1 0.3 0.7)
34
+
35
+ (ImpactModelsPath2 "MIND/R1D2.pt" "TS/M850_8_Layers.pt")
36
+ (ImpactDimension2 3 3)
37
+ (ImpactNumberOfChannels2 1 1)
38
+ (ImpactPatchSize2 0 0 0 0 0 0)
39
+ (ImpactVoxelSize2 2 2 2 2 2 2)
40
+ (ImpactLayersMask2 "1" "00000001")
41
+ (ImpactSubsetFeatures2 32 64)
42
+ (ImpactPCA2 0 0)
43
+ (ImpactDistance2 "L1" "Dice")
44
+ (ImpactLayersWeight2 0.6 0.4)
45
+
46
+ (ImpactModelsPath3 "MIND/R1D2.pt" "TS/M850_8_Layers.pt")
47
+ (ImpactDimension3 3 3)
48
+ (ImpactNumberOfChannels3 1 1)
49
+ (ImpactPatchSize3 0 0 0 0 0 0)
50
+ (ImpactVoxelSize3 2 2 2 2 2 2)
51
+ (ImpactLayersMask3 "1" "00000001")
52
+ (ImpactSubsetFeatures3 32 64)
53
+ (ImpactPCA3 0 0)
54
+ (ImpactDistance3 "L1" "Dice")
55
+ (ImpactLayersWeight3 0.7 0.3)
56
+
57
+ (ImpactUseMixedPrecision "true")
58
+ (ImpactFeaturesMapUpdateInterval -1)
59
+ (ImpactWriteFeatureMaps "false")
60
+ (ImpactMode "Static")
61
+ (ImpactGPU 0)
62
+
63
+ (Metric "Impact" "AdvancedMattesMutualInformation" "TransformBendingEnergyPenalty")
64
+ (Metric0Weight 1)
65
+ (Metric1Weight 0.4)
66
+ (Metric2Weight 10)
67
+
68
+ // imageTypes
69
+ (FixedInternalImagePixelType "float")
70
+ (MovingInternalImagePixelType "float")
71
+ (UseDirectionCosines "true")
72
+
73
+ // components
74
+ (Registration "MultiMetricMultiResolutionRegistration")
75
+ (BSplineTransformSplineOrder 3)
76
+ (UseCyclicTransform "false")
77
+
78
+ // transform
79
+ (AutomaticTransformInitialization "false")
80
+ (AutomaticTransformInitializationMethod "GeometricalCenter")
81
+ (AutomaticScalesEstimation "true")
82
+ (HowToCombineTransforms "Compose")
83
+
84
+
85
+ // optimizer
86
+ (Optimizer "AdaptiveStochasticGradientDescent")
87
+ (MaximumNumberOfSamplingAttempts 8)
88
+ (UseAdaptiveStepSizes "true")
89
+ (UseMultiThreadingForMetrics "true")
90
+ (ASGDParameterEstimationMethod "DisplacementDistribution")
91
+ //(MaximumStepLength 0.6602)
92
+ (SigmoidInitialTime 0.0)
93
+ (NoiseCompensation "true")
94
+ (NumberOfSamplesForExactGradient 4096)
95
+
96
+ // automatic
97
+ (AutomaticParameterEstimation "true")
98
+ //(SP_alpha 1)
99
+ //(SP_A 20.0)
100
+ //(SP a 400)
101
+ //(SigmoidMax 1.0)
102
+ //(SigmoidMin -0.8)
103
+ //(SigmoidScale 0.00000001)
104
+ //(NumberOfGradientMeasurements 10)
105
+ //(NumberOfJacobianMeasurements 1000)
106
+
107
+ (FixedKernelBSplineOrder 3)
108
+ (MovingKernelBSplineOrder 3)
109
+ (CheckNumberOfSamples "true")
110
+ (UseRelativeWeights "false")
111
+
112
+
113
+ // several
114
+ (WriteTransformParametersEachIteration "false")
115
+ (WriteTransformParametersEachResolution "false")
116
+ (ShowExactMetricValue "false")
117
+ (ErodeFixedMask "false")
118
+ (ErodeMovingMask "false")
119
+ (UseBinaryFormatForTransformationParameters "false")
120
+
121
+ // imageSampler
122
+ (Interpolator "BSplineInterpolator")
123
+ (ImageSampler "RandomCoordinate")
124
+ (NewSamplesEveryIteration "true")
125
+ (UseRandomSampleRegion "false")
126
+
127
+ // interpolator and resampler
128
+ (ResampleInterpolator "FinalBSplineInterpolator")
129
+ (FinalBSplineInterpolationOrder 3)
130
+ (BSplineInterpolationOrder 3)
131
+ (Resampler "DefaultResampler")
132
+ (WriteIterationInfo "false")
133
+ (WriteResultImage "false")
134
+ (DefaultPixelValue -1024)
135
+ (ResultImageFormat "mha")
136
+
137
+ (ITKTransformOutputFileNameExtension "itk.txt")
138
+ (WriteITKCompositeTransform "true")